Commits for vsmalladi

v254_preview to v254_preview2 (2011-07-05 to 2011-07-12) v254

• Added expId's and dccAccession's.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 55, context: html, text, full: html, text
• Updated Long labels to all be under 80 characters.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 11, context: html, text, full: html, text
• Updated release notes to refelect the correct number of dropped gbdb files and deprecated tables.
  • src/hg/makeDb/doc/encodeDccMm9/wgEncodeSydhTfbs.release2.notes - lines changed 393, context: html, text, full: html, text
• Added dccAccession and expId's.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 517, context: html, text, full: html, text
• Added more descriptive long label for the second p300 antibody.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.newR2.ra - lines changed 5, context: html, text, full: html, text
• Merge branch 'Development-Mouse'
• Added new html for relese 2 that descirbes resubmitted data and newly added data.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.new.html - lines changed 171, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.newR2.ra - lines changed 1, context: html, text, full: html, text
• Updated spelling of train to strain in metaDb.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 3, context: html, text, full: html, text
• Preliminary defnition for new control RevXLinkChromatin.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text
• Added age and strain information that were missing for the MEL cell line.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhRnaSeq.ra - lines changed 13, context: html, text, full: html, text
• Fixed long and short labels on the recomendation of Kate. Redmine #97. Note 17.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 18, context: html, text, full: html, text
• Updated antibody=Input to antibody=RevXlinkChromatin. Also update the subGroups to remove any control's in antibody and only have zRXLCH. Redmine #4527.
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra - lines changed 29, context: html, text, full: html, text
• Updated antibody=Input to antibody=RevXlinkChromatin. Also update the subGroups to remove any control's in antibody and only have zRXLCH. Renamed files that used Control to Rxlch in file name. Updated name changes to .new.ra for release 2 updates. Redmine #4527
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 7327, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 155, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 155, context: html, text, full: html, text
• Merge branch 'master' into HaibRevXLink
• Added new definition for RevXlinkChromatin provided by Flo and Preti. Redmine #4527.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Added new html file to explain the change of antibody=Input to RevXlinkChromatin. Redmine #4527, #825.
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.html - lines changed 191, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra - lines changed 1, context: html, text, full: html, text
• Added notes file for release of track for third time. Redmine #825.
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeHudsonalphaChipSeq.release3.notes - lines changed 768, context: html, text, full: html, text
• Updated release notes to accuratley reflect files only for release 1.
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release1.notes - lines changed 1680, context: html, text, full: html, text
• Error: Last commit didn't include the following. Updated antibody=Input to antibody=RevXlinkChromatin. Redmine #4527.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 154, context: html, text, full: html, text
• Merge branch 'HaibRevXLink'
• Fixed invalide date 2008-12-117 to 2008-12-11. Redmine #4393. Note 55.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 2, context: html, text, full: html, text
• Removed replicate 2 of lab=HudsonAlpha dataType=ChipSeq cell=K562 antibody=Input treatment=None protocol=PCR2x, as this is not linked as a control for any experiment. Redmine #70, note 29 and Redmine #825, note 20. This was forgotten in commit edcf0a7a003f2e14a299793df2fedd55d70932b0.
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeHudsonalphaChipSeq.release3.notes - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra - lines changed 8, context: html, text, full: html, text
• Added expId's and dccAccessions. Redmine #825, note 25.
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 715, context: html, text, full: html, text
• Removed dccAccessions added by mistake in commit ea5881c6f148e2a4bfafc533a63d6240a3ef330e. Redmine #825, note 25.
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 715, context: html, text, full: html, text
• Added Deprecated Tables that are Signals.
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeHudsonalphaChipSeq.release3.notes - lines changed 45, context: html, text, full: html, text
• Added dccAccession and expId's for release 1. Redmine #70 note 35.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 7, context: html, text, full: html, text
• Updated the Views for to match cv.ra
  • src/hg/encode/DAFs/2.0/uwMm9RnaSeq.daf - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 49, context: html, text, full: html, text
• Added 2 extra views that are on a Mouse track. Redmine #3608.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 12, context: html, text, full: html, text