File Changes for wong

v254_base to v255_preview (2011-07-19 to 2011-07-26) v255

• src/hg/encode/DAFs/2.0/uw5c.daf
  • lines changed 2, context: html, text, full: html, text
    modified daf to match changes to emtadata for 5c
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 55, context: html, text, full: html, text
    added functionality to handle blank spaces, added function to reject blank spaces for required variables, reworked how 'None' is handled as a value, added function to check if there are more values in a ddf line than in the ddfheader
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release3.notes
  • lines changed 2017, context: html, text, full: html, text
    notes files for uw tracks to be put into pushQ
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release2.notes
  • lines changed 2212, context: html, text, full: html, text
    notes files for uw tracks to be put into pushQ
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release2.notes
  • lines changed 1464, context: html, text, full: html, text
    notes files for uw tracks to be put into pushQ
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 10, context: html, text, full: html, text
    removed some region views
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra
  • lines changed 12, context: html, text, full: html, text
    correct hek293b > hek293 in hg18 sydh tfbs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 109, context: html, text, full: html, text
    accession and experimentified cshl short missing ones
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 17, context: html, text, full: html, text
    correct metadata errors in 5c, haib and sydh tfbs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 121, context: html, text, full: html, text
    correct metadata errors in 5c, haib and sydh tfbs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra
  • lines changed 54, context: html, text, full: html, text
    correct metadata errors in 5c, haib and sydh tfbs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 485, context: html, text, full: html, text
    added Uw TFBS geo id's to metaDb
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    bad search and replace move replaced somwhere else
  • lines changed 163, context: html, text, full: html, text
    short labels on Cshl Long
  • lines changed 48, context: html, text, full: html, text
    set defaults for cshl long
  • lines changed 1, context: html, text, full: html, text
    correct some tag errors
  • lines changed 24, context: html, text, full: html, text
    finalized defaults
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.r3.ra
  • lines changed 70, context: html, text, full: html, text
    changed defautls on csdhl short to be K562 only
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra
  • lines changed 57, context: html, text, full: html, text
    changed defautls on csdhl short to be K562 only
  • lines changed 72, context: html, text, full: html, text
    short labels on cshl short
  • lines changed 0, context: html, text, full: html, text
    fixed spacing issues
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html
  • lines changed 1, context: html, text, full: html, text
    moved period out of link
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
  • lines changed 470, context: html, text, full: html, text
    addeed numbers to cell lines for sorting purposes
  • lines changed 0, context: html, text, full: html, text
    correct space error
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html
  • lines changed 8, context: html, text, full: html, text
    updated uw's html files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra
  • lines changed 1, context: html, text, full: html, text
    changed short label
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.html
  • lines changed 6, context: html, text, full: html, text
    updated uw's html files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
  • lines changed 44, context: html, text, full: html, text
    corrected some long label stuff UW
  • lines changed 71, context: html, text, full: html, text
    fixed short labels
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.html
  • lines changed 103, context: html, text, full: html, text
    updated uw's html files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra
  • lines changed 518, context: html, text, full: html, text
    long and short labels uw histone
  • lines changed 1, context: html, text, full: html, text
    changed file sort order fields
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.html
  • lines changed 89, context: html, text, full: html, text
    updated uw's html files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra
  • lines changed 117, context: html, text, full: html, text
    short labels redone on uwtfbs
  • lines changed 57, context: html, text, full: html, text
    long labels uw tfbs
  • lines changed 1, context: html, text, full: html, text
    changed file sort order fields