Commits for wong

v254_base to v255_preview (2011-07-19 to 2011-07-26) v255

• addeed numbers to cell lines for sorting purposes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 470, context: html, text, full: html, text
• correct space error
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• correct hek293b > hek293 in hg18 sydh tfbs
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra - lines changed 12, context: html, text, full: html, text
• added functionality to handle blank spaces, added function to reject blank spaces for required variables, reworked how 'None' is handled as a value, added function to check if there are more values in a ddf line than in the ddfheader
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 55, context: html, text, full: html, text
• corrected some long label stuff UW
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 44, context: html, text, full: html, text
• fixed short labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 71, context: html, text, full: html, text
• short labels redone on uwtfbs
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 117, context: html, text, full: html, text
• long labels uw tfbs
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 57, context: html, text, full: html, text
• long and short labels uw histone
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 518, context: html, text, full: html, text
• bad search and replace move replaced somwhere else
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 1, context: html, text, full: html, text
• notes files for uw tracks to be put into pushQ
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release3.notes - lines changed 2017, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release2.notes - lines changed 2212, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release2.notes - lines changed 1464, context: html, text, full: html, text
• added Uw TFBS geo id's to metaDb
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 485, context: html, text, full: html, text
• removed some region views
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 10, context: html, text, full: html, text
• updated uw's html files
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.html - lines changed 103, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.html - lines changed 89, context: html, text, full: html, text
• correct metadata errors in 5c, haib and sydh tfbs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 121, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra - lines changed 54, context: html, text, full: html, text
• changed short label
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra - lines changed 1, context: html, text, full: html, text
• changed file sort order fields
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 1, context: html, text, full: html, text
• modified daf to match changes to emtadata for 5c
  • src/hg/encode/DAFs/2.0/uw5c.daf - lines changed 2, context: html, text, full: html, text
• moved period out of link
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html - lines changed 1, context: html, text, full: html, text
• changed defautls on csdhl short to be K562 only
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.r3.ra - lines changed 70, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 57, context: html, text, full: html, text
• accession and experimentified cshl short missing ones
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 109, context: html, text, full: html, text
• short labels on Cshl Long
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 163, context: html, text, full: html, text
• short labels on cshl short
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 72, context: html, text, full: html, text
• set defaults for cshl long
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 48, context: html, text, full: html, text
• correct some tag errors
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 1, context: html, text, full: html, text
• finalized defaults
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 24, context: html, text, full: html, text
• fixed spacing issues
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)