File Changes for wong
switch to commits view, user indexv255_preview to v255_preview2 (2011-07-26 to 2011-08-02) v255
- src/hg/encode/encodeDownloadReadme/downloadsReadmeTemplate.txt
- lines changed 45, context: html, text, full: html, text
made a script to push README file to the download directories
- src/hg/encode/encodeDownloadReadme/encodeDownloadReadme.pl
- lines changed 160, context: html, text, full: html, text
made a script to push README file to the download directories
- src/hg/encode/encodeDownloadReadme/makefile
- lines changed 47, context: html, text, full: html, text
made a script to push README file to the download directories
- src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl
- lines changed 3, context: html, text, full: html, text
removed the double slashes that broke things in ie
- src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes
- lines changed 1, context: html, text, full: html, text
added pdf.gz support to mkchangenotes
- lines changed 1, context: html, text, full: html, text
added in matrix to files only list
- src/hg/encode/encodeValidate/doEncodeValidate.pl
- lines changed 18, context: html, text, full: html, text
removed any readme references from doEncodeValidate.pl
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release2.notes
- lines changed 281, context: html, text, full: html, text
updated notes file after loading submission
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes
- lines changed 865, context: html, text, full: html, text
release 1 notes for cshl long
- lines changed 658, context: html, text, full: html, text
errors in notes file, duplicates, and some extra files
- lines changed 64, context: html, text, full: html, text
removed transcriptgencv7 and corrected amount of new tables
- src/hg/makeDb/trackDb/cv/alpha/cv.ra
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra
- lines changed 57, context: html, text, full: html, text
removed parentTable to get methyl seq to comply with CV
- src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
- lines changed 4, context: html, text, full: html, text
added a reference that was recently published
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
- lines changed 480, context: html, text, full: html, text
updated rate unrestricted in boradhistone mdb beta and alpha
- lines changed 319, context: html, text, full: html, text
reremoved fileindex after syncing the metaDb for date unrestricted required a restore of an earlier version of histone
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
- lines changed 37, context: html, text, full: html, text
added replacement submissions
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
incorrect treatment value for SK-N-SH_RA
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
- lines changed 4, context: html, text, full: html, text
removed parentTable from affected tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
- lines changed 8, context: html, text, full: html, text
removed parentTable from affected tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromSynth.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
- lines changed 7, context: html, text, full: html, text
corrected dateReSubmitted to dateResubmitted
- lines changed 5, context: html, text, full: html, text
removed parentTable from affected tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
- lines changed 158, context: html, text, full: html, text
renamed control for gm12878 + igg-rab to have treatment TNFa
- lines changed 75, context: html, text, full: html, text
added missing control to tfbs
- lines changed 17, context: html, text, full: html, text
fixed control metadata issues
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUmassDekker5C.ra
- lines changed 8, context: html, text, full: html, text
removed parentTable from affected tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra
- lines changed 107, context: html, text, full: html, text
added stanzas for primer files
- lines changed 18, context: html, text, full: html, text
redid the compressed files for matrix gz > tgz
- lines changed 1, context: html, text, full: html, text
forgot to generate magic number
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
- lines changed 2, context: html, text, full: html, text
removed parentTable from affected tracks
- lines changed 1309, context: html, text, full: html, text
added new tracks for UWTFBS and Histone
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
- lines changed 2362, context: html, text, full: html, text
added new tracks for UWTFBS and Histone
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeBroadHistone.ra
- lines changed 77, context: html, text, full: html, text
updated rate unrestricted in boradhistone mdb beta and alpha
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
removed PAM from default checked
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html
- lines changed 6, context: html, text, full: html, text
added miltuview instructions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html
- lines changed 18, context: html, text, full: html, text
fixed stuff according to redmine #131(QA requests)
- lines changed 5, context: html, text, full: html, text
added periods to references
- lines changed 2, context: html, text, full: html, text
html cleanup and added line about pooled data
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra
- lines changed 2, context: html, text, full: html, text
changed cv line, and added tier 1 to cell lines
- lines changed 1, context: html, text, full: html, text
fixed stuff according to redmine #131(QA requests)
- lines changed 1, context: html, text, full: html, text
changed view limit to match new signal files
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
- lines changed 2, context: html, text, full: html, text
renamed control for gm12878 + igg-rab to have treatment TNFa
- lines changed 11, context: html, text, full: html, text
added missing control to tfbs
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html
- lines changed 3, context: html, text, full: html, text
put in a line about how primer data must be downloaded to make sense of the matrix
- lines changed 6, context: html, text, full: html, text
added release notes for 5c data
- lines changed 3, context: html, text, full: html, text
cleaned up filesortorder and correct some html mistakes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra
- lines changed 1, context: html, text, full: html, text
added view to filesortorder
- lines changed 1, context: html, text, full: html, text
cleaned up filesortorder and correct some html mistakes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
- lines changed 7, context: html, text, full: html, text
changed wi-28 with ohtam treatment to have it's own tag
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra
- lines changed 18, context: html, text, full: html, text
filled in missing controls
- lines changed 424, context: html, text, full: html, text
added new tracks for UWTFBS and Histone
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra
- lines changed 9, context: html, text, full: html, text
filled in missing controls
- lines changed 536, context: html, text, full: html, text
added new tracks for UWTFBS and Histone
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