Commits for wong
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v255_preview to v255_preview2 (2011-07-26 to 2011-08-02) v255
- added pdf.gz support to mkchangenotes
- src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes - lines changed 1, context: html, text, full: html, text
- release 1 notes for cshl long
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes - lines changed 865, context: html, text, full: html, text
- corrected dateReSubmitted to dateResubmitted
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 7, context: html, text, full: html, text
- turned off hepg2 default
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 3, context: html, text, full: html, text
- changed cv line, and added tier 1 to cell lines
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 2, context: html, text, full: html, text
- renamed control for gm12878 + igg-rab to have treatment TNFa
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 158, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 2, context: html, text, full: html, text
- changed wi-28 with ohtam treatment to have it's own tag
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 7, context: html, text, full: html, text
- added new html line
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 1, context: html, text, full: html, text
- errors in notes file, duplicates, and some extra files
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes - lines changed 658, context: html, text, full: html, text
- removed transcriptgencv7 and corrected amount of new tables
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes - lines changed 64, context: html, text, full: html, text
- put in primer snippet
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 7, context: html, text, full: html, text
- removed PAM from default checked
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 1, context: html, text, full: html, text
- removed term fastq
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
- added stanzas for primer files
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra - lines changed 107, context: html, text, full: html, text
- put in a line about how primer data must be downloaded to make sense of the matrix
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html - lines changed 3, context: html, text, full: html, text
- redid the compressed files for matrix gz > tgz
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra - lines changed 18, context: html, text, full: html, text
- forgot to generate magic number
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra - lines changed 1, context: html, text, full: html, text
- fixed stuff according to redmine #131(QA requests)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 1, context: html, text, full: html, text
- added release notes for 5c data
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html - lines changed 6, context: html, text, full: html, text
- added view to filesortorder
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra - lines changed 1, context: html, text, full: html, text
- cleaned up filesortorder and correct some html mistakes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra - lines changed 1, context: html, text, full: html, text
- added in matrix to files only list
- src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes - lines changed 1, context: html, text, full: html, text
- added periods to references
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html - lines changed 5, context: html, text, full: html, text
- html cleanup and added line about pooled data
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html - lines changed 2, context: html, text, full: html, text
- more html fixes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html - lines changed 2, context: html, text, full: html, text
- more html fixes 2
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html - lines changed 2, context: html, text, full: html, text
- new wondie for link
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html - lines changed 1, context: html, text, full: html, text
- added miltuview instructions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html - lines changed 6, context: html, text, full: html, text
- added missing control to tfbs
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 75, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 11, context: html, text, full: html, text
- fixed control metadata issues
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 17, context: html, text, full: html, text
- filled in missing controls
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 9, context: html, text, full: html, text
- changed view limit to match new signal files
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 1, context: html, text, full: html, text
- added replacement submissions
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 37, context: html, text, full: html, text
- updated notes file after loading submission
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release2.notes - lines changed 281, context: html, text, full: html, text
- QA corrections
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 1, context: html, text, full: html, text
- added a reference that was recently published
- src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html - lines changed 4, context: html, text, full: html, text
- updated rate unrestricted in boradhistone mdb beta and alpha
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 480, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeBroadHistone.ra - lines changed 77, context: html, text, full: html, text
- reremoved fileindex after syncing the metaDb for date unrestricted required a restore of an earlier version of histone
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 319, context: html, text, full: html, text
- removed parentTable to get methyl seq to comply with CV
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra - lines changed 57, context: html, text, full: html, text
- incorrect treatment value for SK-N-SH_RA
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 1, context: html, text, full: html, text
- removed parentTable from affected tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUmassDekker5C.ra - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 2, context: html, text, full: html, text
- removed the double slashes that broke things in ie
- src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl - lines changed 3, context: html, text, full: html, text
- forgot magic number
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUmassDekker5C.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 1, context: html, text, full: html, text
- added new tracks for UWTFBS and Histone
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 1309, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 2362, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 424, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 536, context: html, text, full: html, text
- added 4630 in
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromSynth.ra - lines changed 191, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra - lines changed 119, context: html, text, full: html, text
- long labels
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra - lines changed 10, context: html, text, full: html, text
- made a script to push README file to the download directories
- src/hg/encode/encodeDownloadReadme/downloadsReadmeTemplate.txt - lines changed 45, context: html, text, full: html, text
- src/hg/encode/encodeDownloadReadme/encodeDownloadReadme.pl - lines changed 160, context: html, text, full: html, text
- src/hg/encode/encodeDownloadReadme/makefile - lines changed 47, context: html, text, full: html, text
- removed any readme references from doEncodeValidate.pl
- src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 18, context: html, text, full: html, text
- removed extra 's'
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 1, context: html, text, full: html, text
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