Commits for wong

v256_preview2 to v256_base (2011-08-23 to 2011-08-29) v256

• changed HepG2b > HepG2
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra - lines changed 10, context: html, text, full: html, text
• restored V1 metadata
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra - lines changed 526, context: html, text, full: html, text
• changed come numeric processing behavior, fixed a typo
  • src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 9, context: html, text, full: html, text
• made html for suny gene st release2 modified trackDb
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.html - lines changed 171, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.ra - lines changed 1, context: html, text, full: html, text
• changed e2f6scWhataver to E2F6 in Haib Tfbs. Also added line for .new in trackDb
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 13, context: html, text, full: html, text
• subgroup error fexed
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 35, context: html, text, full: html, text
• qa changes to unc protgeno
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' into validate
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 2, context: html, text, full: html, text
• Merge branch 'validate'
• put in treatment for haib, dmso 0.02pct 7d
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 4, context: html, text, full: html, text
• remade the .new.ra for sydh tfbs
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 860, context: html, text, full: html, text
• modified for trackDb also
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
• renamed some v2 files so they are consistent with v1 filenames
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra - lines changed 141, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.ra - lines changed 12, context: html, text, full: html, text
• updated notes file
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeSunyAlbanyGeneSt.release2.notes - lines changed 20, context: html, text, full: html, text
• took out errant tab
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• corrected regex pattern so it complies with POSIX regex patterns. (We should consider moving our regex engine to PCRE, so it makes things consistent.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• added controlledVocabulary line
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 1, context: html, text, full: html, text
• fixed stuff per QA request
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.ra - lines changed 13, context: html, text, full: html, text
• WERI-Rb-1 is female, not male
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• changed email address to be gersein lab
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.html - lines changed 1, context: html, text, full: html, text