File Changes for cricket

v255_base to v256_preview (2011-08-08 to 2011-08-16) v256

• src/hg/encode/encodeDownloadReadme/downloadsReadmeTemplate.txt
  • lines changed 3, context: html, text, full: html, text
    Vanessa and Katrina's wording change
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes
  • lines changed 289, context: html, text, full: html, text
    removed warnings about attic files
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibGenotype.release1.notes
  • lines changed 2, context: html, text, full: html, text
    Cleaning up the notes file
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 21, context: html, text, full: html, text
    Adding objStatus
  • lines changed 2, context: html, text, full: html, text
    Adding Tims changes to objStatus
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 15, context: html, text, full: html, text
    Cleaning up view names for metaData, Fastq-> RawData, AllRawSig -> RawSignal
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 5, context: html, text, full: html, text
    Cleaning up view names for metaData, Fastq-> RawData, AllRawSig -> RawSignal
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisPet.ra
  • lines changed 2, context: html, text, full: html, text
    Cleaning up view names for metaData, Fastq-> RawData, AllRawSig -> RawSignal
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisRnaSeq.ra
  • lines changed 6, context: html, text, full: html, text
    Cleaning up view names for metaData, Fastq-> RawData, AllRawSig -> RawSignal
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 14, context: html, text, full: html, text
    Changing view Fastq to view RawData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 97, context: html, text, full: html, text
    Updating metaDb
  • lines changed 6, context: html, text, full: html, text
    Trying to make the inventory match up
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 4, context: html, text, full: html, text
    Adding missing expId
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra
  • lines changed 11, context: html, text, full: html, text
    Removed orgiAssembly, added md5sum to fileSortOrder, removed Signal stanza
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Separating GencodeV3 from GencodeV4, using the old V3 html file
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.new.ra
  • lines changed 248, context: html, text, full: html, text
    Outdated .new.ra files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.html
  • lines changed 4, context: html, text, full: html, text
    Spelling mistakes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 1, context: html, text, full: html, text
    Changed default to dense as Jacob requested
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
  • lines changed 15, context: html, text, full: html, text
    Added references
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 564, context: html, text, full: html, text
    Added whole cell instead of cell where misisng, removed the transcript tables we are not going to display them.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.html
  • lines changed 13, context: html, text, full: html, text
    Updating the track description according the lab requests
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.html
  • lines changed 217, context: html, text, full: html, text
    Separating GencodeV3 from GencodeV4, using the old V3 html file
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.ra
  • lines changed 8, context: html, text, full: html, text
    Separating GencodeV3 from GencodeV4, using the old V3 html file
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.html
  • lines changed 198, context: html, text, full: html, text
    Moving the track Description to have the name of the composite
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.new.ra
  • lines changed 130, context: html, text, full: html, text
    Separating GencodeV3 from GencodeV4, using the old V3 html file
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.ra
  • lines changed 1, context: html, text, full: html, text
    Using the new wgEncodeGencodeV4.html file
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.new.ra
  • lines changed 81, context: html, text, full: html, text
    Outdated .new.ra files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra
  • lines changed 355, context: html, text, full: html, text
    Trying to add replacement tracks
  • lines changed 129, context: html, text, full: html, text
    Cleaning up track names for resubmitted data
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.new.ra
  • lines changed 174, context: html, text, full: html, text
    Outdated .new.ra files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra
  • lines changed 10, context: html, text, full: html, text
    Removing score filter
  • lines changed 1, context: html, text, full: html, text
    Adding back fileSortOrder
  • lines changed 4, context: html, text, full: html, text
    Changed to hide
  • lines changed 1, context: html, text, full: html, text
    Removed view and origAssembly from the fileSortOrder
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 417, context: html, text, full: html, text
    Removed view since there was only one view
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra
  • lines changed 14, context: html, text, full: html, text
    Removed orgiAssembly, added md5sum to fileSortOrder, removed Signal stanza