Commits for cricket

v255_base to v256_preview (2011-08-08 to 2011-08-16) v256

• Cleaning up view names for metaData, Fastq-> RawData, AllRawSig -> RawSignal
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisPet.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 6, context: html, text, full: html, text
• Outdated .new.ra files
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.new.ra - lines changed 248, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.new.ra - lines changed 81, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.new.ra - lines changed 174, context: html, text, full: html, text
• Changing view Fastq to view RawData
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 14, context: html, text, full: html, text
• Updating the track description according the lab requests
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.html - lines changed 13, context: html, text, full: html, text
• Moving the track Description to have the name of the composite
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.html - lines changed 198, context: html, text, full: html, text
• Vanessa and Katrina's wording change
  • src/hg/encode/encodeDownloadReadme/downloadsReadmeTemplate.txt - lines changed 3, context: html, text, full: html, text
• Removed view since there was only one view
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra - lines changed 417, context: html, text, full: html, text
• Added whole cell instead of cell where misisng, removed the transcript tables we are not going to display them.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 564, context: html, text, full: html, text
• removed warnings about attic files
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes - lines changed 289, context: html, text, full: html, text
• Adding objStatus
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 21, context: html, text, full: html, text
• Spelling mistakes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.html - lines changed 4, context: html, text, full: html, text
• Changed default to dense as Jacob requested
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra - lines changed 1, context: html, text, full: html, text
• Adding Tims changes to objStatus
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Added references
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html - lines changed 15, context: html, text, full: html, text
• Removing score filter
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra - lines changed 10, context: html, text, full: html, text
• Updating metaDb
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 97, context: html, text, full: html, text
• Adding back fileSortOrder
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra - lines changed 1, context: html, text, full: html, text
• Trying to add replacement tracks
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra - lines changed 355, context: html, text, full: html, text
• Trying to make the inventory match up
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 6, context: html, text, full: html, text
• Cleaning up track names for resubmitted data
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra - lines changed 129, context: html, text, full: html, text
• Changed to hide
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra - lines changed 4, context: html, text, full: html, text
• Separating GencodeV3 from GencodeV4, using the old V3 html file
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.html - lines changed 217, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.new.ra - lines changed 130, context: html, text, full: html, text
• Using the new wgEncodeGencodeV4.html file
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.ra - lines changed 1, context: html, text, full: html, text
• Removed view and origAssembly from the fileSortOrder
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra - lines changed 1, context: html, text, full: html, text
• Cleaning up the notes file
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibGenotype.release1.notes - lines changed 2, context: html, text, full: html, text
• Removed orgiAssembly, added md5sum to fileSortOrder, removed Signal stanza
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 14, context: html, text, full: html, text
• Adding missing expId
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 4, context: html, text, full: html, text