File Changes for wong

v256_preview to v256_preview2 (2011-08-16 to 2011-08-23) v256

• src/hg/encode/encodeMkFilesList/encodeMkFilesList
  • lines changed 1, context: html, text, full: html, text
    changed error message
  • lines changed 5, context: html, text, full: html, text
    changed how mkfiles generates list of files in directory by processing ls
  • lines changed 5, context: html, text, full: html, text
    decided to lock the shared variable just in case
• src/hg/encode/qaDateUnrestrictedCheck/makefile
  • lines changed 27, context: html, text, full: html, text
    added in first version of qaDateUnrestrictedCheck, no comments, basic usage statement, and functionality only. Referenced in redmine #4331
• src/hg/encode/qaDateUnrestrictedCheck/qaDateUnrestrictedCheck
  • lines changed 100, context: html, text, full: html, text
    added in first version of qaDateUnrestrictedCheck, no comments, basic usage statement, and functionality only. Referenced in redmine #4331
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeSunyAlbanyGeneSt.release2.notes
  • lines changed 154, context: html, text, full: html, text
    updated notes for sydh tfbs release 1and added notes for gene ST release 2
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release1.notes
  • lines changed 1210, context: html, text, full: html, text
    updated notes for sydh tfbs release 1and added notes for gene ST release 2
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    changed tags for pbdefetal from PBDEF to PBDEFETAL
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeChromatinMap.ra
  • lines changed 9, context: html, text, full: html, text
    revoked colliding files
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra
  • lines changed 127, context: html, text, full: html, text
    made the K562b to K62 transition
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
  • lines changed 74, context: html, text, full: html, text
    last time I changed date unrestricteds, i didnt change alpha again after the revert. so I'm doing it now, so when release 2 comes along, we don't have weirdo metadata inconsistencies
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV3.ra
  • lines changed 4, context: html, text, full: html, text
    added md5sums
  • lines changed 7, context: html, text, full: html, text
    added dcc accession and expId
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 25, context: html, text, full: html, text
    added expids and dcc accessions
  • lines changed 247, context: html, text, full: html, text
    changed date unrestricted and date submitted for items in hg18 and hg19
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 169, context: html, text, full: html, text
    converted the whole shebang to V2
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 37, context: html, text, full: html, text
    added in missing expId's and accessions for uw and sydh tfbs
  • lines changed 19, context: html, text, full: html, text
    forgot to change the actual values in metaDb
  • lines changed 32, context: html, text, full: html, text
    fixed some control errros ans revoked md5sum colliding files
  • lines changed 3, context: html, text, full: html, text
    revoked an experiment's views for which both alignment replicates were bad
  • lines changed 25, context: html, text, full: html, text
    revoked all objects for colliding experiments
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra
  • lines changed 75, context: html, text, full: html, text
    loaded last 4 submission for unc bsu prot
  • lines changed 5, context: html, text, full: html, text
    added in md5sums for new files
  • lines changed 78, context: html, text, full: html, text
    removed lines for mistakenly added entries from metaDb
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 149, context: html, text, full: html, text
    added in missing expId's and accessions for uw and sydh tfbs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 329, context: html, text, full: html, text
    added in missing expId's and accessions for uw and sydh tfbs
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    started release2 for unc bsu prot
  • lines changed 1, context: html, text, full: html, text
    error in typing t>d
  • lines changed 2, context: html, text, full: html, text
    reversed release 2 changes
  • lines changed 2, context: html, text, full: html, text
    changes for suny genest in trackDb for V2ness
  • lines changed 1, context: html, text, full: html, text
    fixed spelling error
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.html
  • lines changed 4, context: html, text, full: html, text
    added ftp link to gencove v3
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.ra
  • lines changed 278, context: html, text, full: html, text
    changes for suny genest in trackDb for V2ness
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.html
  • lines changed 3, context: html, text, full: html, text
    loaded last 4 submission for unc bsu prot
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.new.ra
  • lines changed 99, context: html, text, full: html, text
    started release2 for unc bsu prot
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra
  • lines changed 21, context: html, text, full: html, text
    loaded last 4 submission for unc bsu prot
  • lines changed 19, context: html, text, full: html, text
    moved release2 stuff into release 1