File Changes for angie

v258_preview2 to v258_base (2011-10-04 to 2011-10-10) v258

• src/hg/hgTracks/vcfTrack.c
  • lines changed 31, context: html, text, full: html, text
    Feature #3710 (vcfTabix UI options): added filtering by value of FILTER column.
  • lines changed 24, context: html, text, full: html, text
    Filter VCF items at load time so they apply to haplotype sorting mode too (oops).
  • lines changed 37, context: html, text, full: html, text
    Feature #3710 (vcfTabix UI options): added optional filter on min QUAL score.
• src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html
  • lines changed 5, context: html, text, full: html, text
    Added description of optional filtering by FILTER column values.
  • lines changed 6, context: html, text, full: html, text
    Feature #3710 (vcfTabix UI options): added optional filter on min QUAL score.
• src/hg/inc/vcfUi.h
  • lines changed 8, context: html, text, full: html, text
    Feature #3710 (vcfTabix UI options): added optional filter on min QUAL score.
• src/hg/lib/vcfUi.c
  • lines changed 44, context: html, text, full: html, text
    Feature #3710 (vcfTabix UI options): added filtering by value of FILTER column.
  • lines changed 24, context: html, text, full: html, text
    Feature #3710 (vcfTabix UI options): added optional filter on min QUAL score.
• src/lib/vcf.c
  • lines changed 2, context: html, text, full: html, text
    Fixed an incorrect regex substr index for VCF FILTER or ALT header defs.
  • lines changed 9, context: html, text, full: html, text
    Loosened regex and handle new non-numeric values of ##FORMAT's "Number"introduced in VCF 4.1.