File Changes for wong

v258_preview2 to v258_base (2011-10-04 to 2011-10-10) v258

• src/hg/makeDb/doc/encodeDccHg19/wgEncodeBuOrchid.release1.notes
  • lines changed 2, context: html, text, full: html, text
    updated for testing purposes
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release3.notes
  • lines changed 383, context: html, text, full: html, text
    some last second uw dnase name chages to add donor id's
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release2.notes
  • lines changed 503, context: html, text, full: html, text
    updated notes file for uw tfbs and histone
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release2.notes
  • lines changed 367, context: html, text, full: html, text
    updated notes file for uw tfbs and histone
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
  • lines changed 181, context: html, text, full: html, text
    added in expIds and dccAccessions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 1, context: html, text, full: html, text
    added objStatus to renamed item and explanation
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 35, context: html, text, full: html, text
    added in expIds and dccAccessions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromSynth.ra
  • lines changed 1, context: html, text, full: html, text
    added treatment to expVars
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 25, context: html, text, full: html, text
    added in expIds and dccAccessions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra
  • lines changed 77, context: html, text, full: html, text
    added expIds and dcc accessions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 23, context: html, text, full: html, text
    renamed CD20+ to have it's donor id also.
  • lines changed 23, context: html, text, full: html, text
    added donor id's to cells that didn't have donors
  • lines changed 109, context: html, text, full: html, text
    restored lost metadata as seqPlatform this time
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 14, context: html, text, full: html, text
    added donor id's to cells that didn't have donors
  • lines changed 129, context: html, text, full: html, text
    some last second uw dnase name chages to add donor id's
  • lines changed 462, context: html, text, full: html, text
    added md5sums, bais to tfbs and removed origAssembly from Dnase
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 50, context: html, text, full: html, text
    updated md5sums
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 186, context: html, text, full: html, text
    added md5sums, bais to tfbs and removed origAssembly from Dnase
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra
  • lines changed 1, context: html, text, full: html, text
    changed filesort order
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra
  • lines changed 17, context: html, text, full: html, text
    renamed CD20+ to have it's donor id also.
  • lines changed 8, context: html, text, full: html, text
    added donor id's to cells that didn't have donors
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
  • lines changed 9, context: html, text, full: html, text
    added donor id's to cells that didn't have donors
  • lines changed 12, context: html, text, full: html, text
    some last second uw dnase name chages to add donor id's
• src/hg/utils/automation/HgDb.pm
  • lines changed 7, context: html, text, full: html, text
    added functionality to set the hg.conf file via environment variable like how QA'ers do it.