Commits for wong

v258_preview2 to v258_base (2011-10-04 to 2011-10-10) v258

• added treatment to expVars
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromSynth.ra - lines changed 1, context: html, text, full: html, text
• added in expIds and dccAccessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 181, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 25, context: html, text, full: html, text
• added expIds and dcc accessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra - lines changed 77, context: html, text, full: html, text
• renamed CD20+ to have it's donor id also.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra - lines changed 17, context: html, text, full: html, text
• added donor id's to cells that didn't have donors
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 9, context: html, text, full: html, text
• changed filesort order
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra - lines changed 1, context: html, text, full: html, text
• added objStatus to renamed item and explanation
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 1, context: html, text, full: html, text
• some last second uw dnase name chages to add donor id's
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release3.notes - lines changed 383, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 12, context: html, text, full: html, text
• added md5sums, bais to tfbs and removed origAssembly from Dnase
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 462, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 186, context: html, text, full: html, text
• restored lost metadata as seqPlatform this time
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 109, context: html, text, full: html, text
• updated md5sums
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 50, context: html, text, full: html, text
• updated notes file for uw tfbs and histone
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release2.notes - lines changed 503, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release2.notes - lines changed 367, context: html, text, full: html, text
• updated for testing purposes
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeBuOrchid.release1.notes - lines changed 2, context: html, text, full: html, text
• added functionality to set the hg.conf file via environment variable like how QA'ers do it.
  • src/hg/utils/automation/HgDb.pm - lines changed 7, context: html, text, full: html, text