File Changes for wong

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v257_base to v258_preview (2011-09-19 to 2011-09-27) v258

src/hg/encode/encodeMkFilesList/encodeMkFilesList
- lines changed 0, context: html, text, full: html, text
  changed whitespace structure
- lines changed 15, context: html, text, full: html, text
  Patched encodeMkFilesList to special case the weirdo cellType>cell and Antibody>antibody weirdness
- lines changed 910, context: html, text, full: html, text
  restructred encodeMkFilesList to be more like accepted conventions
- lines changed 122, context: html, text, full: html, text
  rebuilt the md5sum > metaDb function to allow for comma delimited lists, also added a switch to go between a fast sql lookup with assumptions, and a robust one if that fails
src/hg/encode/encodeValidate/doEncodeValidate.pl
- lines changed 4, context: html, text, full: html, text
  removed legacy code that append PI name if different than grant PI
src/hg/encode/encodeValidate/newtest/DataBrowser.pm
- lines changed 43, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/README
- lines changed 1, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/out/README.txt
- lines changed 0, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/out/load.ra
- lines changed 27, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/out/mdb.txt
- lines changed 3, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/out/trackDb.ra
- lines changed 44, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/allGood/sunyGeneST.daf
- lines changed 22, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/allGood/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/allGood/test.cfg
- lines changed 3, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/sunyGeneST.daf
- lines changed 22, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/test.cfg
- lines changed 5, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/sunyGeneST.daf
- lines changed 22, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/test.cfg
- lines changed 49, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/sunyGeneST.daf
- lines changed 22, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/test.cfg
- lines changed 5, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/sunyGeneST.daf
- lines changed 27, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/test.cfg
- lines changed 10, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/out/README.txt
- lines changed 0, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/out/load.ra
- lines changed 27, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/out/mdb.txt
- lines changed 3, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/out/trackDb.ra
- lines changed 44, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/sunyGeneST.daf
- lines changed 22, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/test.cfg
- lines changed 6, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/out/README.txt
- lines changed 0, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/out/load.ra
- lines changed 18, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/out/mdb.txt
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/out/trackDb.ra
- lines changed 18, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/sunyGeneST.daf
- lines changed 23, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/test.cfg
- lines changed 3, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingAssembly/stanfordHg19Tfbs.daf
- lines changed 35, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingAssembly/test.cfg
- lines changed 11, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingCompositesuffix/stanfordHg19Tfbs.daf
- lines changed 35, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingCompositesuffix/test.cfg
- lines changed 6, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingDatatype/stanfordHg19Tfbs.daf
- lines changed 35, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingDatatype/test.cfg
- lines changed 6, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingGrant/stanfordHg19Tfbs.daf
- lines changed 35, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingGrant/test.cfg
- lines changed 10, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingGroup/stanfordHg19Tfbs.daf
- lines changed 35, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingGroup/test.cfg
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingLab/stanfordHg19Tfbs.daf
- lines changed 35, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingLab/test.cfg
- lines changed 6, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingVariables/stanfordHg19Tfbs.daf
- lines changed 35, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/missingVariables/test.cfg
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/out/README.txt
- lines changed 0, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/out/load.ra
- lines changed 0, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/out/mdb.txt
- lines changed 0, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/out/trackDb.ra
- lines changed 0, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/sunyGeneST.daf
- lines changed 23, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/test.cfg
- lines changed 3, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/config/cv.ra
- lines changed 11173, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/config/downloadsReadmeTemplate.txt
- lines changed 39, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/config/expVars.ra
- lines changed 196, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/config/fields.ra
- lines changed 419, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/config/hg18_chromInfo.txt
- lines changed 49, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/config/labs.ra
- lines changed 68, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/config/pi.ra
- lines changed 181, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/doEncodeMock.pl
- lines changed 28, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/doEncodeValidate.pl
- lines changed 2409, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/ELAVL1_H1ESC_hg19_broadpeak.bed
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/ELAVL1_H1ESC_hg19_broadpeak.bed.00
- lines changed 2874, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/ELAVL1_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/T7Tag_H1ESC_hg19_broadpeak.bed
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/T7Tag_H1ESC_hg19_broadpeak.bed.00
- lines changed 147, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/T7Tag_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/input_H1ESC_hg19_broadpeak.bed
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/input_H1ESC_hg19_broadpeak.bed.00
- lines changed 22855, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/input_H1ESC_hg19_broadpeak.bed.report
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/out/README.txt
- lines changed 0, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/out/load.ra
- lines changed 18, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/out/mdb.txt
- lines changed 2, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/out/trackDb.ra
- lines changed 18, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
src/hg/encode/encodeValidate/newtest/realone/sunyGeneST.daf
- lines changed 22, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/realone/sunyGeneST.ddf
- lines changed 4, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 0, context: html, text, full: html, text
  removed dos style carriage return in unit test dafs and ddfs
src/hg/encode/encodeValidate/newtest/tester.pl
- lines changed 150, context: html, text, full: html, text
  thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
- lines changed 1, context: html, text, full: html, text
  commented out custom package
src/hg/js/ddcl.js
- lines changed 1, context: html, text, full: html, text
  added var to a variable to amke it local
src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release1.notes
- lines changed 1309, context: html, text, full: html, text
  fixed notes file, removed extraneous warnings
src/hg/makeDb/trackDb/cv/alpha/cv.ra
- lines changed 1, context: html, text, full: html, text
  changed regex for objStatus to accept renamed replaced or revoked with an explanation
- lines changed 2, context: html, text, full: html, text
  corrected tags gor ifng
- lines changed 1, context: html, text, full: html, text
  changed objStatus to be cvDefined No
- lines changed 1, context: html, text, full: html, text
  changed monocytes's entry to reflect toher donor's scheme
- lines changed 21, context: html, text, full: html, text
  re entered a non donored CD14+ cell line, as it is being used by other tracks, not sure if those tracks are from the donor or not
- lines changed 1, context: html, text, full: html, text
  changed regex scheme of md5sum to match any amount of a comma delimited list of 32 length hex digits. testes against 1,2,3 terms in console's BRE, not in metaDb though.
- lines changed 1, context: html, text, full: html, text
  made donored cd14+'s tag different than normal cd14+
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
- lines changed 326, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 359, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
- lines changed 96, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 96, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- lines changed 119, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 119, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
- lines changed 62, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 66, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
- lines changed 29, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisDnaPet.ra
- lines changed 6, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 6, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
- lines changed 21, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 21, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra
- lines changed 4, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 4, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra
- lines changed 14, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra
- lines changed 43, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 44, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
- lines changed 42, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 42, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
- lines changed 4005, context: html, text, full: html, text
  loaded lots of haib submissions
- lines changed 177, context: html, text, full: html, text
  added md5sums for new files
- lines changed 8, context: html, text, full: html, text
  added explanation to revoked status
- lines changed 493, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 493, context: html, text, full: html, text
  added bai files to the fileName field
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
- lines changed 81, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 81, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
- lines changed 111, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 111, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
- lines changed 52, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 54, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
- lines changed 69, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 69, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra
- lines changed 2, context: html, text, full: html, text
  md5sum was update when tested mkFilesList
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyRipSeq.ra
- lines changed 16, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 16, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
- lines changed 36, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra
- lines changed 20, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 20, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhRnaSeq.ra
- lines changed 4, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 4, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
- lines changed 961, context: html, text, full: html, text
  added in a lot of new submissions
- lines changed 28, context: html, text, full: html, text
  changed some controls around and changed harvard to yale
- lines changed 714, context: html, text, full: html, text
  added bai files to the fileName field
- lines changed 66, context: html, text, full: html, text
  changed some control to be point to a expId instead of old method
- lines changed 13, context: html, text, full: html, text
  corrected a mistake where a lab name was changed
- lines changed 13, context: html, text, full: html, text
  more lab name changes
- lines changed 103, context: html, text, full: html, text
  added expIds and dccAccessions
- lines changed 10, context: html, text, full: html, text
  corrected one more controlId
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUchicagoTfbs.ra
- lines changed 28, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 28, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
- lines changed 19, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 19, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
- lines changed 162, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 163, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
- lines changed 211, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 211, context: html, text, full: html, text
  cleaned up bam,bai fileName added md5sums
- lines changed 793, context: html, text, full: html, text
  added in a new UW histone tracks (ones with donors)
- lines changed 4, context: html, text, full: html, text
  changed replicate number
- lines changed 793, context: html, text, full: html, text
  full reversiona s some donor id's were broken
- lines changed 793, context: html, text, full: html, text
  added new tracks to TFBS and Histone, this time with corret donor ID's
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
- lines changed 169, context: html, text, full: html, text
  removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
- lines changed 377, context: html, text, full: html, text
  added some tracks, cleaned up bam,bai names in fileName
- lines changed 377, context: html, text, full: html, text
  reverted to earlier tfbs after some loading errors
- lines changed 208, context: html, text, full: html, text
  added new tracks to TFBS and Histone, this time with corret donor ID's
src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 8, context: html, text, full: html, text
  added in .new.ra for openchrom synth, and since it is a one view track, Tim took out the view= tags
src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra
- lines changed 762, context: html, text, full: html, text
  loaded lots of haib submissions
- lines changed 721, context: html, text, full: html, text
  corrected a casing error made by alst commit
- lines changed 2, context: html, text, full: html, text
  found another casing error
src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.new.ra
- lines changed 196, context: html, text, full: html, text
  added in .new.ra for openchrom synth, and since it is a one view track, Tim took out the view= tags
src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra
- lines changed 14, context: html, text, full: html, text
  unrevoked an experiment for release2 that we still have no control for
- lines changed 131, context: html, text, full: html, text
  added in a lot of new submissions
- lines changed 2, context: html, text, full: html, text
  changed html code on some factors, and changed an input to be consistent with the control
src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
- lines changed 5, context: html, text, full: html, text
  changed some dimension names and other stuff in trackDb
src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra
- lines changed 246, context: html, text, full: html, text
  added in a new UW histone tracks (ones with donors)
- lines changed 246, context: html, text, full: html, text
  full reversiona s some donor id's were broken
- lines changed 246, context: html, text, full: html, text
  added new tracks to TFBS and Histone, this time with corret donor ID's
src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra
- lines changed 26, context: html, text, full: html, text
  added in 3 new tracks
- lines changed 3, context: html, text, full: html, text
  addeed treatment lines
- lines changed 26, context: html, text, full: html, text
  full reversiona s some donor id's were broken
- lines changed 28, context: html, text, full: html, text
  added new tracks to TFBS and Histone, this time with corret donor ID's

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