Commits for wong

v257_base to v258_preview (2011-09-19 to 2011-09-27) v258

• changed regex for objStatus to accept renamed replaced or revoked with an explanation
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• changed whitespace structure
  • src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• corrected tags gor ifng
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• changed objStatus to be cvDefined No
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• fixed notes file, removed extraneous warnings
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release1.notes - lines changed 1309, context: html, text, full: html, text
• loaded lots of haib submissions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 4005, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 762, context: html, text, full: html, text
• unrevoked an experiment for release2 that we still have no control for
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 14, context: html, text, full: html, text
• thought I added in the unit tests for encodeValidate earlier. This is the first draft. There are some kinks to work out, but I want to save them here now in case somethign goes wrong
  • src/hg/encode/encodeValidate/newtest/DataBrowser.pm - lines changed 43, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/README - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/out/README.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/allGood/out/load.ra - lines changed 27, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/out/mdb.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/out/trackDb.ra - lines changed 44, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/sunyGeneST.daf - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/allGood/test.cfg - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/sunyGeneST.daf - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/test.cfg - lines changed 5, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/sunyGeneST.daf - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/test.cfg - lines changed 49, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/sunyGeneST.daf - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/test.cfg - lines changed 5, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/sunyGeneST.daf - lines changed 27, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/test.cfg - lines changed 10, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/out/README.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/out/load.ra - lines changed 27, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/out/mdb.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/out/trackDb.ra - lines changed 44, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/sunyGeneST.daf - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/test.cfg - lines changed 6, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/out/README.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/out/load.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/out/mdb.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/out/trackDb.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/sunyGeneST.daf - lines changed 23, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/test.cfg - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingAssembly/stanfordHg19Tfbs.daf - lines changed 35, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingAssembly/test.cfg - lines changed 11, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingCompositesuffix/stanfordHg19Tfbs.daf - lines changed 35, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingCompositesuffix/test.cfg - lines changed 6, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingDatatype/stanfordHg19Tfbs.daf - lines changed 35, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingDatatype/test.cfg - lines changed 6, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingGrant/stanfordHg19Tfbs.daf - lines changed 35, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingGrant/test.cfg - lines changed 10, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingGroup/stanfordHg19Tfbs.daf - lines changed 35, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingGroup/test.cfg - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingLab/stanfordHg19Tfbs.daf - lines changed 35, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingLab/test.cfg - lines changed 6, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingVariables/stanfordHg19Tfbs.daf - lines changed 35, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/missingVariables/test.cfg - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/out/README.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/out/load.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/out/mdb.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/out/trackDb.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/sunyGeneST.daf - lines changed 23, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/test.cfg - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/config/cv.ra - lines changed 11173, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/config/downloadsReadmeTemplate.txt - lines changed 39, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/config/expVars.ra - lines changed 196, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/config/fields.ra - lines changed 419, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/config/hg18_chromInfo.txt - lines changed 49, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/config/labs.ra - lines changed 68, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/config/pi.ra - lines changed 181, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/doEncodeMock.pl - lines changed 28, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/doEncodeValidate.pl - lines changed 2409, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/ELAVL1_H1ESC_hg19_broadpeak.bed - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/ELAVL1_H1ESC_hg19_broadpeak.bed.00 - lines changed 2874, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/ELAVL1_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/T7Tag_H1ESC_hg19_broadpeak.bed - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/T7Tag_H1ESC_hg19_broadpeak.bed.00 - lines changed 147, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/T7Tag_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/input_H1ESC_hg19_broadpeak.bed - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/input_H1ESC_hg19_broadpeak.bed.00 - lines changed 22855, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/input_H1ESC_hg19_broadpeak.bed.report - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/out/README.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/realone/out/load.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/out/mdb.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/out/trackDb.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/sunyGeneST.daf - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/realone/sunyGeneST.ddf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/newtest/tester.pl - lines changed 150, context: html, text, full: html, text
• corrected a casing error made by alst commit
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 721, context: html, text, full: html, text
• changed monocytes's entry to reflect toher donor's scheme
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• added in .new.ra for openchrom synth, and since it is a one view track, Tim took out the view= tags
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.new.ra - lines changed 196, context: html, text, full: html, text
• added md5sums for new files
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 177, context: html, text, full: html, text
• Patched encodeMkFilesList to special case the weirdo cellType>cell and Antibody>antibody weirdness
  • src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 15, context: html, text, full: html, text
• re entered a non donored CD14+ cell line, as it is being used by other tracks, not sure if those tracks are from the donor or not
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 21, context: html, text, full: html, text
• added explanation to revoked status
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 8, context: html, text, full: html, text
• removed dos style carriage return in unit test dafs and ddfs
  • src/hg/encode/encodeValidate/newtest/allGood/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/allGood/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/hasReplicates/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/invalidFiletype/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredVar/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfDafs/requiredView/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/badDdfs/fieldsMismatch/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/badDataVersion/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/baddafs/noDataVersionComment/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/realone/sunyGeneST.daf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeValidate/newtest/realone/sunyGeneST.ddf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• found another casing error
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 2, context: html, text, full: html, text
• added var to a variable to amke it local
  • src/hg/js/ddcl.js - lines changed 1, context: html, text, full: html, text
• added in a lot of new submissions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 961, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 131, context: html, text, full: html, text
• removed all bam= and bai=, leaving only a comma'd list of md5sums. mkFilesList still needs modifications to handle this
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 326, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 96, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 119, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 62, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisDnaPet.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra - lines changed 43, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra - lines changed 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 493, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 81, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 111, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 52, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 69, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyRipSeq.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhRnaSeq.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUchicagoTfbs.ra - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 162, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 211, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 169, context: html, text, full: html, text
• changed some dimension names and other stuff in trackDb
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 5, context: html, text, full: html, text
• changed regex scheme of md5sum to match any amount of a comma delimited list of 32 length hex digits. testes against 1,2,3 terms in console's BRE, not in metaDb though.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• commented out custom package
  • src/hg/encode/encodeValidate/newtest/tester.pl - lines changed 1, context: html, text, full: html, text
• restructred encodeMkFilesList to be more like accepted conventions
  • src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 910, context: html, text, full: html, text
• changed some controls around and changed harvard to yale
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 28, context: html, text, full: html, text
• md5sum was update when tested mkFilesList
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra - lines changed 2, context: html, text, full: html, text
• added bai files to the fileName field
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 493, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 714, context: html, text, full: html, text
• rebuilt the md5sum > metaDb function to allow for comma delimited lists, also added a switch to go between a fast sql lookup with assumptions, and a robust one if that fails
  • src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 122, context: html, text, full: html, text
• made donored cd14+'s tag different than normal cd14+
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• added some tracks, cleaned up bam,bai names in fileName
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 377, context: html, text, full: html, text
• cleaned up bam,bai fileName added md5sums
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 359, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 96, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 119, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisDnaPet.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra - lines changed 44, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra - lines changed 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 81, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 111, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 54, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 69, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyRipSeq.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhRnaSeq.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUchicagoTfbs.ra - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 163, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 211, context: html, text, full: html, text
• added in 3 new tracks
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 26, context: html, text, full: html, text
• addeed treatment lines
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 3, context: html, text, full: html, text
• added in a new UW histone tracks (ones with donors)
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 793, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 246, context: html, text, full: html, text
• changed replicate number
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 4, context: html, text, full: html, text
• reverted to earlier tfbs after some loading errors
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 377, context: html, text, full: html, text
• full reversiona s some donor id's were broken
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 793, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 246, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 26, context: html, text, full: html, text
• added new tracks to TFBS and Histone, this time with corret donor ID's
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 793, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 208, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 246, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 28, context: html, text, full: html, text
• changed html code on some factors, and changed an input to be consistent with the control
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 2, context: html, text, full: html, text
• changed some control to be point to a expId instead of old method
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 66, context: html, text, full: html, text
• removed legacy code that append PI name if different than grant PI
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 4, context: html, text, full: html, text
• corrected a mistake where a lab name was changed
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 13, context: html, text, full: html, text
• more lab name changes
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 13, context: html, text, full: html, text
• added expIds and dccAccessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 103, context: html, text, full: html, text
• corrected one more controlId
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 10, context: html, text, full: html, text