File Changes for cricket

v259_preview2 to v259_base (2011-11-01 to 2011-11-07) v259

• src/hg/htdocs/ENCODE/downloads.html
  • lines changed 3, context: html, text, full: html, text
    Chaning the Format FAQ and links to it according to tickets 4563 and 4169
  • lines changed 0, context: html, text, full: html, text
    These files are also part of ticket 4563
• src/hg/htdocs/ENCODE/downloadsMouse.html
  • lines changed 2, context: html, text, full: html, text
    These files are also part of ticket 4563
• src/hg/htdocs/ENCODE/index.html
  • lines changed 1, context: html, text, full: html, text
    Chaning the Format FAQ and links to it according to tickets 4563 and 4169
• src/hg/htdocs/ENCODE/pubs.html
  • lines changed 97, context: html, text, full: html, text
    Added more citations and changed the broken foreign chars
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 98, context: html, text, full: html, text
    Chaning the Format FAQ and links to it according to tickets 4563 and 4169
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release2.notes
  • lines changed 154, context: html, text, full: html, text
    Chnaged the names of the supplemental files and the directories of the dropped files
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 6, context: html, text, full: html, text
    Adding the TSSHmm
  • lines changed 248, context: html, text, full: html, text
    Changing the antibody labels
  • lines changed 237, context: html, text, full: html, text
    adding parenthesis for Tim
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra
  • lines changed 63, context: html, text, full: html, text
    Fixed filters, treatment labels, and weird labExpId
  • lines changed 7, context: html, text, full: html, text
    Renamed two conflicting objects by the originating lab
  • lines changed 1, context: html, text, full: html, text
    Changed a replicate 2 to replicate 1 according to ticket 4234
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 471, context: html, text, full: html, text
    Replacing the V3 data with V7
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 883, context: html, text, full: html, text
    Added the TssHmm data
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.new.ra
  • lines changed 217, context: html, text, full: html, text
    Getting rid of the Single View Situation
  • lines changed 2, context: html, text, full: html, text
    Trying to fix the filtering, moved a lot of lines around to make these two composites comparable
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra
  • lines changed 17, context: html, text, full: html, text
    Fixed filters, treatment labels, and weird labExpId
  • lines changed 4, context: html, text, full: html, text
    Renamed two conflicting objects by the originating lab
  • lines changed 195, context: html, text, full: html, text
    Changing long and short label to remove replicate.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.new.ra
  • lines changed 144, context: html, text, full: html, text
    Replacing the V3 data with V7
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.new.ra
  • lines changed 9, context: html, text, full: html, text
    Trying to fix the filtering, moved a lot of lines around to make these two composites comparable