Commits for cricket

v259_preview2 to v259_base (2011-11-01 to 2011-11-07) v259

• Adding the TSSHmm
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
• Chaning the Format FAQ and links to it according to tickets 4563 and 4169
  • src/hg/htdocs/ENCODE/downloads.html - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/index.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQformat.html - lines changed 98, context: html, text, full: html, text
• These files are also part of ticket 4563
  • src/hg/htdocs/ENCODE/downloads.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/ENCODE/downloadsMouse.html - lines changed 2, context: html, text, full: html, text
• Getting rid of the Single View Situation
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.new.ra - lines changed 217, context: html, text, full: html, text
• Chnaged the names of the supplemental files and the directories of the dropped files
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release2.notes - lines changed 154, context: html, text, full: html, text
• Added more citations and changed the broken foreign chars
  • src/hg/htdocs/ENCODE/pubs.html - lines changed 97, context: html, text, full: html, text
• Changing the antibody labels
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 248, context: html, text, full: html, text
• Replacing the V3 data with V7
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra - lines changed 471, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.new.ra - lines changed 144, context: html, text, full: html, text
• adding parenthesis for Tim
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 237, context: html, text, full: html, text
• Fixed filters, treatment labels, and weird labExpId
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 17, context: html, text, full: html, text
• Trying to fix the filtering, moved a lot of lines around to make these two composites comparable
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.new.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.new.ra - lines changed 9, context: html, text, full: html, text
• Renamed two conflicting objects by the originating lab
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 4, context: html, text, full: html, text
• Changing long and short label to remove replicate.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 195, context: html, text, full: html, text
• Changed a replicate 2 to replicate 1 according to ticket 4234
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 1, context: html, text, full: html, text
• Added the TssHmm data
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 883, context: html, text, full: html, text