Commits for tdreszer
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v259_base to v260_preview (2011-11-07 to 2011-11-15) v260
- Moved as code in hgTables down to lib and access it from hgc and hgTrackUi. This is to remove 'extraFields' support as per Jim's request in redmine 5883 and 5582
- src/hg/hgTables/asObj.c - lines changed 111, context: html, text, full: html, text
- src/hg/hgTables/bigBed.c - lines changed 37, context: html, text, full: html, text
- src/hg/hgTables/bigWig.c - lines changed 14, context: html, text, full: html, text
- src/hg/hgTables/filterFields.c - lines changed 35, context: html, text, full: html, text
- src/hg/hgTables/hgTables.h - lines changed 28, context: html, text, full: html, text
- src/hg/hgTables/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/hgTables/schema.c - lines changed 47, context: html, text, full: html, text
- src/hg/hgc/bigBedClick.c - lines changed 47, context: html, text, full: html, text
- src/hg/inc/makeItemsItem.h - lines changed 3, context: html, text, full: html, text
- src/hg/inc/samAlignment.h - lines changed 6, context: html, text, full: html, text
- src/hg/lib/makeItemsItem.c - lines changed 7, context: html, text, full: html, text
- src/hg/lib/samAlignment.c - lines changed 8, context: html, text, full: html, text
- src/hg/lib/trackDbCustom.c - lines changed 12, context: html, text, full: html, text
- Fixed newly introduced filterBy bug.
- Get DNA color feature: added support for composites and limited to currently visible tracks. This is for redmine 685.
- Updated README as per redmine 5963. Documented filterComposite which was a major oversight and viewLimitsMax which has existed since the reign of dinosaurs. Also removed mention of 'metadata' lines, 'hierarchy' and 'dividers' which are no longer supported.
- src/hg/makeDb/trackDb/README - lines changed 81, context: html, text, full: html, text
- When document link setting in cv.ra contains 'missing' then then rpint that. For redmine 1012
- src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 14, context: html, text, full: html, text
- Extended 'missing' support to individual validation documents.
- src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 14, context: html, text, full: html, text
- Thanks Larry for finding this obscure bug. Handing off pointer instead of pointer to pointer to a routine that takes a void pointer.
- src/hg/hgTracks/imageV2.c - lines changed 1, context: html, text, full: html, text
- Remove old code that was ifdef'd out.
- src/hg/hgTracks/imageV2.c - lines changed 52, context: html, text, full: html, text
- Subtracks need groups if there will be sorting later.
- src/hg/hgTracks/hgTracks.c - lines changed 15, context: html, text, full: html, text
- Redmine 5992. Backing out previous fix in order to make a targeted fix for patching. At this checkin, code should be back to 6f7dabcd1d87152560c0b66bb126bce0a0582415.
- src/hg/hgTracks/hgTracks.c - lines changed 15, context: html, text, full: html, text
- Redmine 5992. This is the targetted conservative fix to hgTracks.c. Please make a patch from the difference between this and the previos hgTracks.c check-in
- src/hg/hgTracks/hgTracks.c - lines changed 3, context: html, text, full: html, text
- Fixed mrna schema bug 5990.
- src/hg/hgTables/schema.c - lines changed 2, context: html, text, full: html, text
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