File Changes for vsmalladi

v261_preview2 to v261_base (2011-12-20 to 2012-01-03) v261

• src/hg/encode/DAFs/3.0/hg19/wgEncodeCaltechRnaSeq.daf
  • lines changed 3, context: html, text, full: html, text
    Updated DAF to accept bigBed files for Junctions. Redmine 2019.
• src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf
  • lines changed 2, context: html, text, full: html, text
    Fixed DAF to have correct spelling of downloadOnly. Redmine #5986.
  • lines changed 3, context: html, text, full: html, text
    Fixed the spelling of Signal views, to mathc cv.ra.
• src/hg/encode/encodeValidate/config/fields.ra
  • lines changed 15, context: html, text, full: html, text
    Added rnaExtract, localization and strain to fields.ra.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    Shortened tag for OlfactBulb because it was causing problems. No current data in mm9 is referencing this term.
• src/hg/makeDb/trackDb/cv/public/cv.ra
  • lines changed 73, context: html, text, full: html, text
    Changes are approved and are tested. Ready fro Public site. Redmine #6387.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html
  • lines changed 5, context: html, text, full: html, text
    Added information about 4 cells/experiments being orignally mapped and analyzed on hg18 in the reference Hanson paper. Redmine #4577.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile
  • lines changed 2, context: html, text, full: html, text
    Added 16 experiments for UW DGF track. Redmine #3631.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 2257, context: html, text, full: html, text
    Added 16 experiments for UW DGF track. Redmine #3631.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 2261, context: html, text, full: html, text
    Added new 20 submissions. Redmine #4468.
  • lines changed 289, context: html, text, full: html, text
    Renamed RawSignal to Signal, as this was decided in version 1 of track, but lab used older DAF. Redmine #4468.
  • lines changed 36, context: html, text, full: html, text
    Put into the attic all replicates > 2. Redmine #4468.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra
  • lines changed 2024, context: html, text, full: html, text
    Added 17 new experiments. Redmine #4469.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Updated trackDb to have caltech release 2 on dev and release1 on beta and public.
  • lines changed 4, context: html, text, full: html, text
    Added 16 experiments for UW DGF track. Redmine #3631.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra
  • lines changed 1, context: html, text, full: html, text
    Updated track configuration to subtrack configuration for Signals. Redmine #110, #111.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra
  • lines changed 1, context: html, text, full: html, text
    Updated track configuration to subtrack configuration for Signals. Redmine #110, #111.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra
  • lines changed 646, context: html, text, full: html, text
    Added 16 experiments for UW DGF track. Redmine #3631.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra
  • lines changed 543, context: html, text, full: html, text
    Added new 20 submissions. Redmine #4468.
  • lines changed 60, context: html, text, full: html, text
    Renamed RawSignal to Signal, as this was decided in version 1 of track, but lab used older DAF. Redmine #4468.
  • lines changed 147, context: html, text, full: html, text
    Put into the attic all replicates > 2. Redmine #4468.
  • lines changed 22, context: html, text, full: html, text
    Updated comments to include #display no for attic experiments.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra
  • lines changed 609, context: html, text, full: html, text
    Added 17 new experiments. Redmine #4469.