Commits for vsmalladi

v261_preview2 to v261_base (2011-12-20 to 2012-01-03) v261

• Added rnaExtract, localization and strain to fields.ra.
  • src/hg/encode/encodeValidate/config/fields.ra - lines changed 15, context: html, text, full: html, text
• Fixed DAF to have correct spelling of downloadOnly. Redmine #5986.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf - lines changed 2, context: html, text, full: html, text
• Updated DAF to accept bigBed files for Junctions. Redmine 2019.
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeCaltechRnaSeq.daf - lines changed 3, context: html, text, full: html, text
• Changes are approved and are tested. Ready fro Public site. Redmine #6387.
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 73, context: html, text, full: html, text
• Added new 20 submissions. Redmine #4468.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 2261, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra - lines changed 543, context: html, text, full: html, text
• Fixed the spelling of Signal views, to mathc cv.ra.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf - lines changed 3, context: html, text, full: html, text
• Updated track configuration to subtrack configuration for Signals. Redmine #110, #111.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra - lines changed 1, context: html, text, full: html, text
• Renamed RawSignal to Signal, as this was decided in version 1 of track, but lab used older DAF. Redmine #4468.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 289, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra - lines changed 60, context: html, text, full: html, text
• Put into the attic all replicates > 2. Redmine #4468.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra - lines changed 147, context: html, text, full: html, text
• Updated trackDb to have caltech release 2 on dev and release1 on beta and public.
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
• Updated comments to include #display no for attic experiments.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra - lines changed 22, context: html, text, full: html, text
• Added 16 experiments for UW DGF track. Redmine #3631.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 2257, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 646, context: html, text, full: html, text
• Merge branch 'Development-Mouse'
• Shortened tag for OlfactBulb because it was causing problems. No current data in mm9 is referencing this term.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Added information about 4 cells/experiments being orignally mapped and analyzed on hg18 in the reference Hanson paper. Redmine #4577.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html - lines changed 5, context: html, text, full: html, text
• Added 17 new experiments. Redmine #4469.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 2024, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 609, context: html, text, full: html, text