File Changes for wong

v262_preview2 to v262_base (2012-01-17 to 2012-01-24) v262

• python/lib/ucscgenomics/qa.py
  • lines changed 24, context: html, text, full: html, text
    made it so that certain tests skip non-positional tables
• python/lib/ucscgenomics/ra.py
  • lines changed 29, context: html, text, full: html, text
    Willy draft 2 for trackDb print option in ra.py
  • lines changed 11, context: html, text, full: html, text
    fixed a bug where the 'parent' or 'subTrack' key will be treated as such even with things like >>>>> in front of it
• src/hg/encode/encodeMkFilesList/encodeMkFilesList
  • lines changed 18, context: html, text, full: html, text
    changed it so that the md5sum collision check is aware of revoked status
• src/hg/encode/encodeQaInit/encodeQaInit
  • lines changed 7, context: html, text, full: html, text
    changed sql output to change depending on whether it's a release 1 or N
  • lines changed 1, context: html, text, full: html, text
    introduced a random colon in other commit
  • lines changed 0, context: html, text, full: html, text
    fixed whitespace issues
  • lines changed 1, context: html, text, full: html, text
    changing claim mail name
• src/hg/encode/encodeQaPrepareRelease/encodeQaPrepareRelease
  • lines changed 5, context: html, text, full: html, text
    changed it to not put any tag if it's a stage to public
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    moved mouse data version over to encode.pm
• src/hg/encode/qaUpdateMetadata/qaUpdateMetadata
  • lines changed 1, context: html, text, full: html, text
    fixed broken english
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release2.notes
  • lines changed 4421, context: html, text, full: html, text
    notes for haib tfbs release 2, initial draft, not yet ready
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    changing E2F6's tag to be like normal convention
  • lines changed 1, context: html, text, full: html, text
    Revert "changing E2F6's tag to be like normal convention" This reverts commit 0d8dec27181aaaa6bee914bc1f5b1954b06d7ab3.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 7, context: html, text, full: html, text
    changed dataVersion date
  • lines changed 2, context: html, text, full: html, text
    udpated md5sum
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 1642, context: html, text, full: html, text
    massive metadata update and fixes
  • lines changed 231, context: html, text, full: html, text
    fixed E2F6 cv issue
  • lines changed 353, context: html, text, full: html, text
    added in replacement tracks for haib tfbs
  • lines changed 353, context: html, text, full: html, text
    Error in last submission. Not all tracks should be a V2. Revert "added in replacement tracks for haib tfbs" This reverts commit 8348cae9f1eb51ce89b59195d4d7aaad5b685f1b.
  • lines changed 41, context: html, text, full: html, text
    added in accessions and expIds
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 1, context: html, text, full: html, text
    revoked old bad bigwig
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibGenotype.ra
  • lines changed 7, context: html, text, full: html, text
    changed dataVersion date
  • lines changed 2, context: html, text, full: html, text
    udpated md5sum
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    fixed include statements to set the stage for how uwdnase should have been
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.html
  • lines changed 1, context: html, text, full: html, text
    pre-qa fix
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.html
  • lines changed 6, context: html, text, full: html, text
    qa changes for haib genotype html
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra
  • lines changed 171, context: html, text, full: html, text
    long label changes
  • lines changed 402, context: html, text, full: html, text
    short labels
  • lines changed 8, context: html, text, full: html, text
    renamed tracks to not have vendor code in antibody name
  • lines changed 48, context: html, text, full: html, text
    added in replacement tracks for haib tfbs
  • lines changed 48, context: html, text, full: html, text
    Error in last submission. Not all tracks should be a V2. Revert "added in replacement tracks for haib tfbs" This reverts commit 8348cae9f1eb51ce89b59195d4d7aaad5b685f1b.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.html
  • lines changed 129, context: html, text, full: html, text
    moving to release3 html
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra
  • lines changed 19, context: html, text, full: html, text
    manual revert of an accidentally leaked revoke, setting up scenario for some qa process tests
  • lines changed 4076, context: html, text, full: html, text
    renaming uwdnase to have the proper track tag
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release3.html
  • lines changed 129, context: html, text, full: html, text
    moving to release3 html
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release3.patch.ra
  • lines changed 4076, context: html, text, full: html, text
    checking in patch for uw Dnase patch to revoke cd14 rep 1
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release3.ra
  • lines changed 4076, context: html, text, full: html, text
    renaming uwdnase to have the proper track tag
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra
  • lines changed 1, context: html, text, full: html, text
    applying correction to release 3
• src/hg/utils/automation/Encode.pm
  • lines changed 3, context: html, text, full: html, text
    moved mouse data version over to encode.pm