Commits for wong

v262_preview2 to v262_base (2012-01-17 to 2012-01-24) v262

• changed sql output to change depending on whether it's a release 1 or N
  • src/hg/encode/encodeQaInit/encodeQaInit - lines changed 7, context: html, text, full: html, text
• introduced a random colon in other commit
  • src/hg/encode/encodeQaInit/encodeQaInit - lines changed 1, context: html, text, full: html, text
• fixed whitespace issues
  • src/hg/encode/encodeQaInit/encodeQaInit - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• changed it to not put any tag if it's a stage to public
  • src/hg/encode/encodeQaPrepareRelease/encodeQaPrepareRelease - lines changed 5, context: html, text, full: html, text
• long label changes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 171, context: html, text, full: html, text
• short labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 402, context: html, text, full: html, text
• massive metadata update and fixes
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 1642, context: html, text, full: html, text
• revoked old bad bigwig
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 1, context: html, text, full: html, text
• notes for haib tfbs release 2, initial draft, not yet ready
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release2.notes - lines changed 4421, context: html, text, full: html, text
• pre-qa fix
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.html - lines changed 1, context: html, text, full: html, text
• Willy draft 2 for trackDb print option in ra.py
  • python/lib/ucscgenomics/ra.py - lines changed 29, context: html, text, full: html, text
• changed it so that the md5sum collision check is aware of revoked status
  • src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 18, context: html, text, full: html, text
• moving to release3 html
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release3.html - lines changed 129, context: html, text, full: html, text
• checking in patch for uw Dnase patch to revoke cd14 rep 1
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release3.patch.ra - lines changed 4076, context: html, text, full: html, text
• manual revert of an accidentally leaked revoke, setting up scenario for some qa process tests
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 19, context: html, text, full: html, text
• renaming uwdnase to have the proper track tag
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 4076, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release3.ra - lines changed 4076, context: html, text, full: html, text
• fixed include statements to set the stage for how uwdnase should have been
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
• resolve merge
• changing E2F6's tag to be like normal convention
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Revert "changing E2F6's tag to be like normal convention" This reverts commit 0d8dec27181aaaa6bee914bc1f5b1954b06d7ab3.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• fixed E2F6 cv issue
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 231, context: html, text, full: html, text
• changing claim mail name
  • src/hg/encode/encodeQaInit/encodeQaInit - lines changed 1, context: html, text, full: html, text
• applying correction to release 3
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 1, context: html, text, full: html, text
• qa changes for haib genotype html
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.html - lines changed 6, context: html, text, full: html, text
• renamed tracks to not have vendor code in antibody name
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 8, context: html, text, full: html, text
• moved mouse data version over to encode.pm
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/Encode.pm - lines changed 3, context: html, text, full: html, text
• fixed broken english
  • src/hg/encode/qaUpdateMetadata/qaUpdateMetadata - lines changed 1, context: html, text, full: html, text
• added in replacement tracks for haib tfbs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 353, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 48, context: html, text, full: html, text
• changed dataVersion date
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibGenotype.ra - lines changed 7, context: html, text, full: html, text
• udpated md5sum
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibGenotype.ra - lines changed 2, context: html, text, full: html, text
• fixed a bug where the 'parent' or 'subTrack' key will be treated as such even with things like >>>>> in front of it
  • python/lib/ucscgenomics/ra.py - lines changed 11, context: html, text, full: html, text
• made it so that certain tests skip non-positional tables
  • python/lib/ucscgenomics/qa.py - lines changed 24, context: html, text, full: html, text
• Error in last submission. Not all tracks should be a V2. Revert "added in replacement tracks for haib tfbs" This reverts commit 8348cae9f1eb51ce89b59195d4d7aaad5b685f1b.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 353, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 48, context: html, text, full: html, text
• added in accessions and expIds
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 41, context: html, text, full: html, text