File Changes for larrym

v261_base to v262_preview (2012-01-03 to 2012-01-10) v262

• src/hg/lib/customFactory.c
  • lines changed 49, context: html, text, full: html, text
    check for illegal chromosomes in bam and big* track loaders (redmine #2572)
• src/hg/lib/fileUi.c
  • lines changed 1, context: html, text, full: html, text
    use cloneString to fix a "using freed memory" problem (see redmine 6467)
• src/hg/lib/snp125Ui.c
  • lines changed 1, context: html, text, full: html, text
    add synonym for stop-loss, which appears in snp135 data (see redmine #6419)
• src/hg/utils/makeTableList/makeTableList.c
  • lines changed 15, context: html, text, full: html, text
    support -host, -user and -password
• src/inc/bamFile.h
  • lines changed 12, context: html, text, full: html, text
    add bamChromList
• src/lib/bamFile.c
  • lines changed 76, context: html, text, full: html, text
    add bamChromList
  • lines changed 7, context: html, text, full: html, text
    suppress too verbose messages in samtools >= 0.1.18; see redmine #6491