File Changes for vsmalladi

v261_base to v262_preview (2012-01-03 to 2012-01-10) v262

• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf
  • lines changed 16, context: html, text, full: html, text
    Added Spikein's view and updated DAF to most up-to-date settings. Redmine 5698.
• src/hg/encode/DAFs/3.0/mm9/wgEncodeCaltechRnaSeq.daf
  • lines changed 4, context: html, text, full: html, text
    Updated variables to include treatment. Redmine #4156
• src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf
  • lines changed 2, context: html, text, full: html, text
    Updated the data format for Spikeins to be doc so that they load. Redmine #5986.
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release2.notes
  • lines changed 73, context: html, text, full: html, text
    Updated notes files to match current state of release 2.Redmine #2019.
  • lines changed 108, context: html, text, full: html, text
    Updated notes file for track, was missing some files. Redmine #2019.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 2, context: html, text, full: html, text
    Shortned tags for small and large intenstine to accomadte 64 character limit of table names.
  • lines changed 1, context: html, text, full: html, text
    Shortned term for Placenta to allow for table names to fit 64 character limit for Mouse.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 145, context: html, text, full: html, text
    Added meta-data for new Junctions file formats. Redmine #2019.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 833, context: html, text, full: html, text
    Added 7 new submissions. Redmine #4486.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.html
  • lines changed 3, context: html, text, full: html, text
    Changed Header tags within Display Convention and Configuration section to be h4 from h3, to match size of Line about how to find meta-data about a subTrack. Redmine #6083.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra
  • lines changed 110, context: html, text, full: html, text
    Added 7 new submissions. Redmine #4486.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile
  • lines changed 2, context: html, text, full: html, text
    Added the first 15 submissions and track description. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 2491, context: html, text, full: html, text
    Added the first 15 submissions and track description. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra
  • lines changed 3771, context: html, text, full: html, text
    Added 29 submissions to track. Redmine #5393.
  • lines changed 131, context: html, text, full: html, text
    Added 1 more submissions. Redmine #5393.
  • lines changed 211, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
  • lines changed 541, context: html, text, full: html, text
    Added 4 more submissions. Redmine #5393.
  • lines changed 651, context: html, text, full: html, text
    Added 5 new experiments for track. Redmine #5393.
  • lines changed 26, context: html, text, full: html, text
    Updated md5sum's for Mouse Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra
  • lines changed 309, context: html, text, full: html, text
    Added 2 submissions for track. Redmine #6476.
  • lines changed 617, context: html, text, full: html, text
    Added 4 submissions to track. Redmine #6476.
  • lines changed 57, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
  • lines changed 321, context: html, text, full: html, text
    Added 2 more submissions. Redmine #6476
  • lines changed 155, context: html, text, full: html, text
    Added 1 new submissions. Redmine #6476.
  • lines changed 7, context: html, text, full: html, text
    Updated md5sum's for Mouse Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra
  • lines changed 1587, context: html, text, full: html, text
    Added 12 submissions for track. Redmine #5394
  • lines changed 128, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra
  • lines changed 215, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra
  • lines changed 138, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 184, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 97, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 14, context: html, text, full: html, text
    Shortned tags for small and large intenstine to accomadte 64 character limit of table names.
  • lines changed 169, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra
  • lines changed 120, context: html, text, full: html, text
    Added 1 more submissions to track. Redmine #4469.
  • lines changed 77, context: html, text, full: html, text
    Fixed incorrect sex assigned to Patski cell line for track. Redmine #4469.
  • lines changed 29, context: html, text, full: html, text
    Shortned tags for small and large intenstine to accomadte 64 character limit of table names.
  • lines changed 113, context: html, text, full: html, text
    Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Added 12 submissions for track. Redmine #5394
  • lines changed 2, context: html, text, full: html, text
    Added 29 submissions to track. Redmine #5393.
  • lines changed 2, context: html, text, full: html, text
    Added 2 submissions for track. Redmine #6476.
  • lines changed 3, context: html, text, full: html, text
    Added the first 15 submissions and track description. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.html
  • lines changed 116, context: html, text, full: html, text
    Added the first 15 submissions and track description. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.ra
  • lines changed 436, context: html, text, full: html, text
    Added the first 15 submissions and track description. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra
  • lines changed 803, context: html, text, full: html, text
    Added 29 submissions to track. Redmine #5393.
  • lines changed 9, context: html, text, full: html, text
    Added 1 more submissions. Redmine #5393.
  • lines changed 36, context: html, text, full: html, text
    Added 4 more submissions. Redmine #5393.
  • lines changed 47, context: html, text, full: html, text
    Added 5 new experiments for track. Redmine #5393.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.new.ra
  • lines changed 505, context: html, text, full: html, text
    Added 2 submissions for track. Redmine #6476.
  • lines changed 147, context: html, text, full: html, text
    Added 4 submissions to track. Redmine #6476.
  • lines changed 73, context: html, text, full: html, text
    Added 2 more submissions. Redmine #6476
  • lines changed 38, context: html, text, full: html, text
    Added 1 new submissions. Redmine #6476.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.new.ra
  • lines changed 700, context: html, text, full: html, text
    Added 12 submissions for track. Redmine #5394
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra
  • lines changed 10, context: html, text, full: html, text
    Shortned tags for small and large intenstine to accomadte 64 character limit of table names.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra
  • lines changed 37, context: html, text, full: html, text
    Added 1 more submissions to track. Redmine #4469.
  • lines changed 12, context: html, text, full: html, text
    Fixed incorrect sex assigned to Patski cell line for track. Redmine #4469.
  • lines changed 25, context: html, text, full: html, text
    Shortned tags for small and large intenstine to accomadte 64 character limit of table names.