Commits for vsmalladi
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v261_base to v262_preview (2012-01-03 to 2012-01-10) v262
- Added meta-data for new Junctions file formats. Redmine #2019.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 145, context: html, text, full: html, text
- Added 1 more submissions to track. Redmine #4469.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 120, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 37, context: html, text, full: html, text
- Fixed incorrect sex assigned to Patski cell line for track. Redmine #4469.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 77, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 12, context: html, text, full: html, text
- Updated the data format for Spikeins to be doc so that they load. Redmine #5986.
- src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf - lines changed 2, context: html, text, full: html, text
- Shortned tags for small and large intenstine to accomadte 64 character limit of table names.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 29, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 25, context: html, text, full: html, text
- Added 12 submissions for track. Redmine #5394
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 1587, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.new.ra - lines changed 700, context: html, text, full: html, text
- Added 29 submissions to track. Redmine #5393.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 3771, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra - lines changed 803, context: html, text, full: html, text
- Added 2 submissions for track. Redmine #6476.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra - lines changed 309, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.new.ra - lines changed 505, context: html, text, full: html, text
- Merge branch 'master' into Development
- Updated notes files to match current state of release 2.Redmine #2019.
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release2.notes - lines changed 73, context: html, text, full: html, text
- Merge branch 'Development'
- Added 4 submissions to track. Redmine #6476.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra - lines changed 617, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.new.ra - lines changed 147, context: html, text, full: html, text
- Added 1 more submissions. Redmine #5393.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 131, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra - lines changed 9, context: html, text, full: html, text
- Updated notes file for track, was missing some files. Redmine #2019.
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release2.notes - lines changed 108, context: html, text, full: html, text
- Updated md5sum's for all mouse tracks in preperation for the Mouse Encode Freeze.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 211, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra - lines changed 57, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 128, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 215, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 138, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 184, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 97, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 169, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 113, context: html, text, full: html, text
- Added Spikein's view and updated DAF to most up-to-date settings. Redmine 5698.
- src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf - lines changed 16, context: html, text, full: html, text
- Added 2 more submissions. Redmine #6476
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra - lines changed 321, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.new.ra - lines changed 73, context: html, text, full: html, text
- Added 4 more submissions. Redmine #5393.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 541, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra - lines changed 36, context: html, text, full: html, text
- Added 7 new submissions. Redmine #4486.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 833, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 110, context: html, text, full: html, text
- Fixed merge conflict regarding Matt and myself adding in submissions for SydhTfbs.
- Updated variables to include treatment. Redmine #4156
- src/hg/encode/DAFs/3.0/mm9/wgEncodeCaltechRnaSeq.daf - lines changed 4, context: html, text, full: html, text
- Shortned term for Placenta to allow for table names to fit 64 character limit for Mouse.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- Added 5 new experiments for track. Redmine #5393.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 651, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra - lines changed 47, context: html, text, full: html, text
- Added 1 new submissions. Redmine #6476.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra - lines changed 155, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.new.ra - lines changed 38, context: html, text, full: html, text
- Updated md5sum's for Mouse Freeze.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 26, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra - lines changed 7, context: html, text, full: html, text
- Changed Header tags within Display Convention and Configuration section to be h4 from h3, to match size of Line about how to find meta-data about a subTrack. Redmine #6083.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.html - lines changed 3, context: html, text, full: html, text
- Added the first 15 submissions and track description. Redmine #5986.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 2491, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.html - lines changed 116, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.ra - lines changed 436, context: html, text, full: html, text
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