File Changes for cricket

v262_preview to v262_preview2 (2012-01-10 to 2012-01-17) v262

• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlShortRnaSeq.daf
  • lines changed 17, context: html, text, full: html, text
    Adding protocol doc to the DAF and protocols expVar
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeGencodeV10.release1.notes
  • lines changed 83, context: html, text, full: html, text
    Generating notes files, including fixing the table name in the metaDb
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 3, context: html, text, full: html, text
    Adding the issue with gender to the U87 cell line. Changing gender to unknown.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 114, context: html, text, full: html, text
    Removing all traces of the HUVEC files see ticket 1634, note 37
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV10.ra
  • lines changed 51, context: html, text, full: html, text
    Added md5sums, missing file, and corrected file names to not have .gz
  • lines changed 35, context: html, text, full: html, text
    Zipping up the downloads files
  • lines changed 3, context: html, text, full: html, text
    Generating notes files, including fixing the table name in the metaDb
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 2, context: html, text, full: html, text
    updating object status to replaced for 2 objects
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 2, context: html, text, full: html, text
    Adding sex F to all U87 cell lines, the actual gender of the cell is in question but these files are mapped to female
  • lines changed 1, context: html, text, full: html, text
    Removing sex from Genotype because Flo says that the reporting is gender indifferent
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra
  • lines changed 2, context: html, text, full: html, text
    Adding sex F to all U87 cell lines, the actual gender of the cell is in question but these files are mapped to female
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 5, context: html, text, full: html, text
    Adding sex F to all U87 cell lines, the actual gender of the cell is in question but these files are mapped to female
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 9, context: html, text, full: html, text
    Adding sex F to all U87 cell lines, the actual gender of the cell is in question but these files are mapped to female
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 29, context: html, text, full: html, text
    Adding sex F to all U87 cell lines, the actual gender of the cell is in question but these files are mapped to female
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Removing sex from Genotype because Flo says that the reporting is gender indifferent
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.html
  • lines changed 31, context: html, text, full: html, text
    Changing some labels and wording according to ticket 5698 note #8
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra
  • lines changed 3, context: html, text, full: html, text
    Changing some labels and wording according to ticket 5698 note #8
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra
  • lines changed 2241, context: html, text, full: html, text
    Changing to release2.ra from new.ra
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.html
  • lines changed 1, context: html, text, full: html, text
    Removed a $ that caused issues in the mailto
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.ra
  • lines changed 2241, context: html, text, full: html, text
    Changing to release2.ra from new.ra
  • lines changed 120, context: html, text, full: html, text
    Removing all traces of the HUVEC files see ticket 1634, note 37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html
  • lines changed 2, context: html, text, full: html, text
    Rephrasing Verification section as per ticket 1710