Commits for cricket

v262_preview to v262_preview2 (2012-01-10 to 2012-01-17) v262

• Added md5sums, missing file, and corrected file names to not have .gz
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV10.ra - lines changed 51, context: html, text, full: html, text
• Adding the issue with gender to the U87 cell line. Changing gender to unknown.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• Rephrasing Verification section as per ticket 1710
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html - lines changed 2, context: html, text, full: html, text
• updating object status to replaced for 2 objects
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 2, context: html, text, full: html, text
• Adding sex F to all U87 cell lines, the actual gender of the cell is in question but these files are mapped to female
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 29, context: html, text, full: html, text
• Removed a $ that caused issues in the mailto
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.html - lines changed 1, context: html, text, full: html, text
• Changing to release2.ra from new.ra
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 2241, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.ra - lines changed 2241, context: html, text, full: html, text
• Removing sex from Genotype because Flo says that the reporting is gender indifferent
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
• Removing all traces of the HUVEC files see ticket 1634, note 37
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 114, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.ra - lines changed 120, context: html, text, full: html, text
• Zipping up the downloads files
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV10.ra - lines changed 35, context: html, text, full: html, text
• Generating notes files, including fixing the table name in the metaDb
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGencodeV10.release1.notes - lines changed 83, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV10.ra - lines changed 3, context: html, text, full: html, text
• Changing some labels and wording according to ticket 5698 note #8
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra - lines changed 3, context: html, text, full: html, text
• Adding protocol doc to the DAF and protocols expVar
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlShortRnaSeq.daf - lines changed 17, context: html, text, full: html, text