File Changes for vsmalladi

v262_base to v263_preview (2012-01-24 to 2012-01-31) v263

• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwRepliSeq.release1.notes
  • lines changed 47, context: html, text, full: html, text
    Renamed all SK-N-SH_RA files to SK-N-SH based on lab information. Updated meta-data, notes file, trackDb, files.txt and md5sum.txt. Redmine #4577.
• src/hg/makeDb/doc/encodeDccMm9/wgEncodePsuHistone.release1.notes
  • lines changed 465, context: html, text, full: html, text
    Added correct release notes for this release. Redmine #111.
• src/hg/makeDb/doc/encodeDccMm9/wgEncodePsuTfbs.release1.notes
  • lines changed 354, context: html, text, full: html, text
    Added correct release notes for this release. Redmine #110.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    Added more human redable label for Osteobl.
  • lines changed 3, context: html, text, full: html, text
    Fixed link to Rajinder Kaul faculty page, error found in checkLinks.
  • lines changed 16, context: html, text, full: html, text
    Changed tissues to be lower case. Redmine #6744
  • lines changed 4, context: html, text, full: html, text
    Added protocol for orderId for Spleen for Stam lab.
  • lines changed 193, context: html, text, full: html, text
    Added new registration and protocols for 16 mouse tissues/cells.
• src/hg/makeDb/trackDb/cv/public/cv.ra
  • lines changed 34, context: html, text, full: html, text
    Moved over all approved changes from beta/cv.ra. Redmine #6683. Removed duplicated lines caused by use of raMerge. Redmine #5977.
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra
  • lines changed 11, context: html, text, full: html, text
    Added patch release of revoking subId 943 due to incorrect rawdata files submitted. Redmine #6731
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Added patch release of revoking subId 943 due to incorrect rawdata files submitted. Redmine #6731
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.patch.ra
  • lines changed 2392, context: html, text, full: html, text
    Added patch release of revoking subId 943 due to incorrect rawdata files submitted. Redmine #6731
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
  • lines changed 17, context: html, text, full: html, text
    Fixed the naming of wgEncodeBroadHistoneDnd41Control objects to have control=std in the name following naming conenvtions. Also updated antibody to be Input. Redmine #4145.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 263, context: html, text, full: html, text
    Removed files for experiment 707, bad rawdata. Data was never released so all occurance could be removed. Redmine #4486.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwRepliSeq.ra
  • lines changed 121, context: html, text, full: html, text
    Renamed all SK-N-SH_RA files to SK-N-SH based on lab information. Updated meta-data, notes file, trackDb, files.txt and md5sum.txt. Redmine #4577.
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Update tags to be release2 instead of just new.ra. Redmine #4145
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.new.ra
  • lines changed 4205, context: html, text, full: html, text
    Update tags to be release2 instead of just new.ra. Redmine #4145
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html
  • lines changed 166, context: html, text, full: html, text
    Update tags to be release2 instead of just new.ra. Redmine #4145
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.ra
  • lines changed 4205, context: html, text, full: html, text
    Update tags to be release2 instead of just new.ra. Redmine #4145
  • lines changed 597, context: html, text, full: html, text
    Made first pass at changing labels to be standard and fit under size restrictions. Redmine #4145.
  • lines changed 2, context: html, text, full: html, text
    Fixed the naming of wgEncodeBroadHistoneDnd41Control objects to have control=std in the name following naming conenvtions. Also updated antibody to be Input. Redmine #4145.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra
  • lines changed 18, context: html, text, full: html, text
    Removed files for experiment 707, bad rawdata. Data was never released so all occurance could be removed. Redmine #4486.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra
  • lines changed 51, context: html, text, full: html, text
    Renamed all SK-N-SH_RA files to SK-N-SH based on lab information. Updated meta-data, notes file, trackDb, files.txt and md5sum.txt. Redmine #4577.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.ra
  • lines changed 3, context: html, text, full: html, text
    Fixed typo in color for which left out a digit. Was 204,121,16 changed to 204,121,167.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra
  • lines changed 6, context: html, text, full: html, text
    Fixed typo in color for which left out a digit. Was 204,121,16 changed to 204,121,167.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html
  • lines changed 17, context: html, text, full: html, text
    Redmine #111 1. Changed Title from "Rationale for the Mouse ENCODE Project" -> "Reasons for the Mouse ENCODE Project" 2. Updated downloads page to link to the hgFileUi 3. Seperated contact name and email on seperate line 4. Added periods '.' after each title and made sure they were not hyperlinked.
  • lines changed 5, context: html, text, full: html, text
    Redmine #111 1. Removed first person useage in the "Rationale for the Mouse ENCODE Project" and renamed section from "Reasons for the Mouse ENCODE Project"
  • lines changed 9, context: html, text, full: html, text
    Fixes found by Pre-QA: Redmine #111 1. Changed Signal Display mode to mean+whiskers 2. Changed Description sentence to be third person voice. Updated working of "The contribution of DNA that with a function preserved in mammals versus t "Levels of three histone modifications are being determined" -> "Levels of three histone modifications were determined" 3. Fixed misspelled Alignments and change 'are being' -> 'were' 4. Deleted duplicate 'the' 5. Changed credits section to be passive voice.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra
  • lines changed 1, context: html, text, full: html, text
    Updated Peak defaults to be Pack. Redmine #111.
  • lines changed 1, context: html, text, full: html, text
    Updated label for Immortal to be immortalized. Redmine #111.
  • lines changed 2, context: html, text, full: html, text
    Fixes found by Pre-QA: Redmine #111 1. Changed Signal Display mode to mean+whiskers 2. Changed Description sentence to be third person voice. Updated working of "The contribution of DNA that with a function preserved in mammals versus t "Levels of three histone modifications are being determined" -> "Levels of three histone modifications were determined" 3. Fixed misspelled Alignments and change 'are being' -> 'were' 4. Deleted duplicate 'the' 5. Changed credits section to be passive voice.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra
  • lines changed 626, context: html, text, full: html, text
    Added release 2 for track for more data for MEL Cell line. Already included in input for MEL data. Redmine #6703.
  • lines changed 1, context: html, text, full: html, text
    Updated label for Immortal to be immortalized. Redmine #111.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html
  • lines changed 21, context: html, text, full: html, text
    Redmine #111 1. Changed Title from "Rationale for the Mouse ENCODE Project" -> "Reasons for the Mouse ENCODE Project" 2. Updated downloads page to link to the hgFileUi 3. Seperated contact name and email on seperate line 4. Added periods '.' after each title and made sure they were not hyperlinked.
  • lines changed 5, context: html, text, full: html, text
    Redmine #111 1. Removed first person useage in the "Rationale for the Mouse ENCODE Project" and renamed section from "Reasons for the Mouse ENCODE Project"
  • lines changed 8, context: html, text, full: html, text
    Fixes found by Pre-QA: Redmine #110 1. Changed Signal Display mode to mean+whiskers 2. Changed Description sentence to be third person voice. Updated working of "The contribution of DNA that with a function preserved in mammals versus that with a function in only one species will be discovered" 3. Fixed misspelled Alignments and change 'are being' -> 'were' 4. Deleted duplicate 'the' 5. Changed credits section to be passive voice.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra
  • lines changed 5, context: html, text, full: html, text
    Updated Peak defaults to be Pack.Also changed default from G1E/GATA1 to G1E/GATA2 Redmine #110.
  • lines changed 2, context: html, text, full: html, text
    Fixes found by Pre-QA: Redmine #110 1. Changed Signal Display mode to mean+whiskers 2. Changed Description sentence to be third person voice. Updated working of "The contribution of DNA that with a function preserved in mammals versus that with a function in only one species will be discovered" 3. Fixed misspelled Alignments and change 'are being' -> 'were' 4. Deleted duplicate 'the' 5. Changed credits section to be passive voice.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra
  • lines changed 4, context: html, text, full: html, text
    Fixed typo in color for which left out a digit. Was 204,121,16 changed to 204,121,167.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra
  • lines changed 12, context: html, text, full: html, text
    Fixed typo in color for which left out a digit. Was 204,121,16 changed to 204,121,167.