Commits for vsmalladi
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v262_base to v263_preview (2012-01-24 to 2012-01-31) v263
- Updated Peak defaults to be Pack. Redmine #111.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 1, context: html, text, full: html, text
- Updated Peak defaults to be Pack.Also changed default from G1E/GATA1 to G1E/GATA2 Redmine #110.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra - lines changed 5, context: html, text, full: html, text
- Added correct release notes for this release. Redmine #110.
- src/hg/makeDb/doc/encodeDccMm9/wgEncodePsuTfbs.release1.notes - lines changed 354, context: html, text, full: html, text
- Added correct release notes for this release. Redmine #111.
- src/hg/makeDb/doc/encodeDccMm9/wgEncodePsuHistone.release1.notes - lines changed 465, context: html, text, full: html, text
- Added release 2 for track for more data for MEL Cell line. Already included in input for MEL data. Redmine #6703.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra - lines changed 626, context: html, text, full: html, text
- Update tags to be release2 instead of just new.ra. Redmine #4145
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.new.ra - lines changed 4205, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html - lines changed 166, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.ra - lines changed 4205, context: html, text, full: html, text
- Updated label for Immortal to be immortalized. Redmine #111.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra - lines changed 1, context: html, text, full: html, text
- Made first pass at changing labels to be standard and fit under size restrictions. Redmine #4145.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.ra - lines changed 597, context: html, text, full: html, text
- Fixed the naming of wgEncodeBroadHistoneDnd41Control objects to have control=std in the name following naming conenvtions. Also updated antibody to be Input. Redmine #4145.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 17, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.ra - lines changed 2, context: html, text, full: html, text
- Added more human redable label for Osteobl.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- Moved over all approved changes from beta/cv.ra. Redmine #6683. Removed duplicated lines caused by use of raMerge. Redmine #5977.
- src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 34, context: html, text, full: html, text
- Redmine #111
1. Changed Title from "Rationale for the Mouse ENCODE Project" -> "Reasons for the Mouse ENCODE Project"
2. Updated downloads page to link to the hgFileUi
3. Seperated contact name and email on seperate line
4. Added periods '.' after each title and made sure they were not hyperlinked.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 17, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html - lines changed 21, context: html, text, full: html, text
- Redmine #111
1. Removed first person useage in the "Rationale for the Mouse ENCODE Project" and renamed section from "Reasons for the Mouse ENCODE Project"
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html - lines changed 5, context: html, text, full: html, text
- Renamed all SK-N-SH_RA files to SK-N-SH based on lab information. Updated meta-data, notes file, trackDb, files.txt and md5sum.txt. Redmine #4577.
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwRepliSeq.release1.notes - lines changed 47, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwRepliSeq.ra - lines changed 121, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra - lines changed 51, context: html, text, full: html, text
- Added patch release of revoking subId 943 due to incorrect rawdata files submitted. Redmine #6731
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra - lines changed 11, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.patch.ra - lines changed 2392, context: html, text, full: html, text
- Removed files for experiment 707, bad rawdata. Data was never released so all occurance could be removed. Redmine #4486.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 263, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 18, context: html, text, full: html, text
- Fixes found by Pre-QA: Redmine #110
1. Changed Signal Display mode to mean+whiskers
2. Changed Description sentence to be third person voice. Updated working of "The contribution of DNA that with a function preserved in mammals versus that with a function in only one species will be discovered"
3. Fixed misspelled Alignments and change 'are being' -> 'were'
4. Deleted duplicate 'the'
5. Changed credits section to be passive voice.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra - lines changed 2, context: html, text, full: html, text
- Fixes found by Pre-QA: Redmine #111
1. Changed Signal Display mode to mean+whiskers
2. Changed Description sentence to be third person voice. Updated working of "The contribution of DNA that with a function preserved in mammals versus t
"Levels of three histone modifications are being determined" -> "Levels of three histone modifications were determined"
3. Fixed misspelled Alignments and change 'are being' -> 'were'
4. Deleted duplicate 'the'
5. Changed credits section to be passive voice.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 9, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 2, context: html, text, full: html, text
- Fixed link to Rajinder Kaul faculty page, error found in checkLinks.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
- Changed tissues to be lower case. Redmine #6744
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 16, context: html, text, full: html, text
- Added protocol for orderId for Spleen for Stam lab.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 4, context: html, text, full: html, text
- Fixed typo in color for which left out a digit. Was 204,121,16 changed to 204,121,167.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 12, context: html, text, full: html, text
- Added new registration and protocols for 16 mouse tissues/cells.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 193, context: html, text, full: html, text
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