File Changes for wong

v263_preview to v263_preview2 (2012-01-31 to 2011-02-07) v263

• python/lib/ucscgenomics/qa.py
  • lines changed 3, context: html, text, full: html, text
    added in snippet to detect if a label is still autogenerated
• python/lib/ucscgenomics/ra.py
  • lines changed 42, context: html, text, full: html, text
    reversing morgan's merge, and adding back in his comments
• src/hg/encode/encodeLoad/doEncodeLoad.pl
  • lines changed 47, context: html, text, full: html, text
    bigBed loading ability added in
• src/hg/encode/encodeLoad/doEncodeUnload.pl
  • lines changed 26, context: html, text, full: html, text
    bigBed loading ability added in
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release2.notes
  • lines changed 31, context: html, text, full: html, text
    updated notes for haib tfbs
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release3.notes
  • lines changed 2370, context: html, text, full: html, text
    first pass at notes for histone
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release3.notes
  • lines changed 1635, context: html, text, full: html, text
    first pass at release 3 notes for uw tfbs
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 12, context: html, text, full: html, text
    correcting some errors found in willy's comment shuffling
  • lines changed 1, context: html, text, full: html, text
    correcting an incorrect key name
  • lines changed 7, context: html, text, full: html, text
    added in taxol treatment
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 309, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 435, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
  • lines changed 74, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 89, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 51, context: html, text, full: html, text
    added in metadata for replacement peaks SL1655 and SL1507
  • lines changed 3, context: html, text, full: html, text
    added in md5sums for the replacement files
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 123, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
  • lines changed 166, context: html, text, full: html, text
    md5sums for Riken
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra
  • lines changed 15, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProtFasp.ra
  • lines changed 3, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra
  • lines changed 33, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 11, context: html, text, full: html, text
    expIds and accessions
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCaltechRnaSeq.ra
  • lines changed 309, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCshlLongRnaSeq.ra
  • lines changed 430, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeGisRnaPet.ra
  • lines changed 67, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeRikenCage.ra
  • lines changed 123, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUncBsuProt.ra
  • lines changed 15, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwAffyExonArray.ra
  • lines changed 33, context: html, text, full: html, text
    updated cricket's tracks with the final freeze dates, staged to beta
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    adding in alpha tag and release3 ra for uw tfbs
  • lines changed 2, context: html, text, full: html, text
    added in alpha tag to new release3 .ra Riken cAge
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.html
  • lines changed 4, context: html, text, full: html, text
    pre-qa fixes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra
  • lines changed 32, context: html, text, full: html, text
    added in replacement tracks for SL1655 and SL1507
  • lines changed 2, context: html, text, full: html, text
    pre-qa fixes for .ra files haib tfbs
  • lines changed 31, context: html, text, full: html, text
    self merge to balance whitespace
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.html
  • lines changed 2, context: html, text, full: html, text
    pre-qa fixes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.html
  • lines changed 160, context: html, text, full: html, text
    moving files to release tagged structure
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 1, context: html, text, full: html, text
    making it so that plus and minus have the same draw window
  • lines changed 1, context: html, text, full: html, text
    fixed short label to be consistent
  • lines changed 2209, context: html, text, full: html, text
    moving files to release tagged structure
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.html
  • lines changed 160, context: html, text, full: html, text
    moving files to release tagged structure
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra
  • lines changed 2209, context: html, text, full: html, text
    moving files to release tagged structure
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html
  • lines changed 1, context: html, text, full: html, text
    more accurate release note
  • lines changed 3, context: html, text, full: html, text
    added in snippet about all objects having an FDR of 1%
  • lines changed 4, context: html, text, full: html, text
    pre-qa fixes
  • lines changed 2, context: html, text, full: html, text
    pre-qa fixes again
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra
  • lines changed 669, context: html, text, full: html, text
    long labels for uw histone
  • lines changed 79, context: html, text, full: html, text
    short labels histone
  • lines changed 1, context: html, text, full: html, text
    pre-qa fixes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html
  • lines changed 94, context: html, text, full: html, text
    html for release 3 uw tfbs
  • lines changed 2, context: html, text, full: html, text
    pre-qa fixes again
  • lines changed 1, context: html, text, full: html, text
    fixed misspelling for month
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.ra
  • lines changed 578, context: html, text, full: html, text
    long labels for uw tfbs
  • lines changed 15, context: html, text, full: html, text
    last commit should have said cleaning up UwTfbs trackDb release 3
  • lines changed 8, context: html, text, full: html, text
    wgEncodeUwTfbs.release3.ra
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 6, context: html, text, full: html, text
    adding bigBed to certain trackDb tags for the new bisulfite track
• src/hg/utils/automation/Encode.pm
  • lines changed 1, context: html, text, full: html, text
    bigBed loading ability added in