Commits for wong
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v263_preview to v263_preview2 (2012-01-31 to 2011-02-07) v263
- updated cricket's tracks with the final freeze dates, staged to beta
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 309, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 435, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra - lines changed 74, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 89, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 123, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra - lines changed 15, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProtFasp.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra - lines changed 33, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCaltechRnaSeq.ra - lines changed 309, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCshlLongRnaSeq.ra - lines changed 430, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeGisRnaPet.ra - lines changed 67, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeRikenCage.ra - lines changed 123, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUncBsuProt.ra - lines changed 15, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwAffyExonArray.ra - lines changed 33, context: html, text, full: html, text
- reversing morgan's merge, and adding back in his comments
- python/lib/ucscgenomics/ra.py - lines changed 42, context: html, text, full: html, text
- long labels for uw histone
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 669, context: html, text, full: html, text
- short labels histone
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 79, context: html, text, full: html, text
- first pass at notes for histone
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release3.notes - lines changed 2370, context: html, text, full: html, text
- more accurate release note
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html - lines changed 1, context: html, text, full: html, text
- added in snippet about all objects having an FDR of 1%
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html - lines changed 3, context: html, text, full: html, text
- adding in alpha tag and release3 ra for uw tfbs
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- long labels for uw tfbs
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.ra - lines changed 578, context: html, text, full: html, text
- last commit should have said cleaning up UwTfbs trackDb release 3
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.ra - lines changed 15, context: html, text, full: html, text
- correcting some errors found in willy's comment shuffling
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 12, context: html, text, full: html, text
- wgEncodeUwTfbs.release3.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.ra - lines changed 8, context: html, text, full: html, text
- first pass at release 3 notes for uw tfbs
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release3.notes - lines changed 1635, context: html, text, full: html, text
- expIds and accessions
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 11, context: html, text, full: html, text
- added in snippet to detect if a label is still autogenerated
- python/lib/ucscgenomics/qa.py - lines changed 3, context: html, text, full: html, text
- html for release 3 uw tfbs
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html - lines changed 94, context: html, text, full: html, text
- added in replacement tracks for SL1655 and SL1507
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 32, context: html, text, full: html, text
- added in metadata for replacement peaks SL1655 and SL1507
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 51, context: html, text, full: html, text
- added in md5sums for the replacement files
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 3, context: html, text, full: html, text
- pre-qa fixes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.html - lines changed 4, context: html, text, full: html, text
- pre-qa fixes for .ra files haib tfbs
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 2, context: html, text, full: html, text
- updated notes for haib tfbs
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release2.notes - lines changed 31, context: html, text, full: html, text
- correcting an incorrect key name
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- pre-qa fixes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.html - lines changed 2, context: html, text, full: html, text
- bigBed loading ability added in
- src/hg/encode/encodeLoad/doEncodeLoad.pl - lines changed 47, context: html, text, full: html, text
- src/hg/encode/encodeLoad/doEncodeUnload.pl - lines changed 26, context: html, text, full: html, text
- src/hg/utils/automation/Encode.pm - lines changed 1, context: html, text, full: html, text
- adding bigBed to certain trackDb tags for the new bisulfite track
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 6, context: html, text, full: html, text
- making it so that plus and minus have the same draw window
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 1, context: html, text, full: html, text
- fixed short label to be consistent
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 1, context: html, text, full: html, text
- moving files to release tagged structure
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.html - lines changed 160, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 2209, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.html - lines changed 160, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra - lines changed 2209, context: html, text, full: html, text
- added in alpha tag to new release3 .ra Riken cAge
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- pre-qa fixes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 1, context: html, text, full: html, text
- pre-qa fixes again
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html - lines changed 2, context: html, text, full: html, text
- md5sums for Riken
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 166, context: html, text, full: html, text
- added in taxol treatment
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 7, context: html, text, full: html, text
- fixed misspelling for month
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html - lines changed 1, context: html, text, full: html, text
- self merge to balance whitespace
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 31, context: html, text, full: html, text
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