File Changes for vsmalladi

v264_preview2 to v264_base (2012-02-28 to 2012-03-06) v264

• python/virtual.txt
  • lines changed 4, context: html, text, full: html, text
    Added clarifications for python virtual environment use.
  • lines changed 1, context: html, text, full: html, text
    Fixed typo. Added extra i.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 6, context: html, text, full: html, text
    Added more to 6 treatment descriptions.
  • lines changed 12, context: html, text, full: html, text
    Added 1 age and 1 treatment for Ren lab.
  • lines changed 8, context: html, text, full: html, text
    Fixes found in code review Redmine 7133 1. Fixed the labels of diffProtA to be protocl instead of protein 3. Changed tissue catilage to tissue cartilage
  • lines changed 30, context: html, text, full: html, text
    Fixed naming of differentiaion protocols to match diffProtA naming schema.
  • lines changed 3, context: html, text, full: html, text
    Renamed diffDMEM_7d to follow differntiation protocol treatments.
  • lines changed 1, context: html, text, full: html, text
    Fixed special Beta character to use html formating. Fixes in Code Review. Redmine #7133.
  • lines changed 6, context: html, text, full: html, text
    Fixed the vendorId and labels for BRG1 and INI1 which were switched.
  • lines changed 17, context: html, text, full: html, text
    Removed BMDM, as this is not a cell line, but a differentiation of Bone Marrow.
  • lines changed 2, context: html, text, full: html, text
    Shortened tag so that table names will fit table limit.
  • lines changed 2, context: html, text, full: html, text
    Shortened term for diffProt7d, doesn't follow convention, but is the only way to fit.
  • lines changed 5, context: html, text, full: html, text
    Removed duplicate registration of Bone_marrow_derived_macrophage_differentiation to diffProtD_7d.
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Fixes for Redmine #2606 1. Made patch.ra for wgEncodeUw5C to allow for leakof track within new supertrack. 2. Updated shortlabel to be consistent with wgEncodeUmass5c Redmine #225
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html
  • lines changed 1, context: html, text, full: html, text
    Updated release date to be March. Redmine #4145
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUmassDekker5C.ra
  • lines changed 1, context: html, text, full: html, text
    Fixed shortlabel to be less than 17 characters. Redmine #225.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.patch.ra
  • lines changed 12, context: html, text, full: html, text
    Fixes for Redmine #2606 1. Made patch.ra for wgEncodeUw5C to allow for leakof track within new supertrack. 2. Updated shortlabel to be consistent with wgEncodeUmass5c Redmine #225
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.ra
  • lines changed 1, context: html, text, full: html, text
    Fixes for Redmine #2606 1. Made patch.ra for wgEncodeUw5C to allow for leakof track within new supertrack. 2. Updated shortlabel to be consistent with wgEncodeUmass5c Redmine #225
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra
  • lines changed 101, context: html, text, full: html, text
    Added updated expIds and accessions after adding age to the expVars. Redmine 5394.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 1771, context: html, text, full: html, text
    Added 15 experiments to track. Redmine #4468.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.html
  • lines changed 1, context: html, text, full: html, text
    Changed link from hgdownload-test to hgdownload. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra
  • lines changed 154, context: html, text, full: html, text
    Added in missing treatment in the subGroup line that was forgotten in commit 98353eb7fbf5b2f0c5a2e3ee07c7e4f680181206.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.ra
  • lines changed 76, context: html, text, full: html, text
    Added in missing treatment in the subGroup line that was forgotten in commit 98353eb7fbf5b2f0c5a2e3ee07c7e4f680181206.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.ra
  • lines changed 88, context: html, text, full: html, text
    Added in missing treatment in the subGroup line that was forgotten in commit 98353eb7fbf5b2f0c5a2e3ee07c7e4f680181206.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra
  • lines changed 407, context: html, text, full: html, text
    Added 15 experiments to track. Redmine #4468.