Commits for vsmalladi

v264_preview2 to v264_base (2012-02-28 to 2012-03-06) v264

• Fixes for Redmine #2606 1. Made patch.ra for wgEncodeUw5C to allow for leakof track within new supertrack. 2. Updated shortlabel to be consistent with wgEncodeUmass5c Redmine #225
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.patch.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.ra - lines changed 1, context: html, text, full: html, text
• Fixed shortlabel to be less than 17 characters. Redmine #225.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUmassDekker5C.ra - lines changed 1, context: html, text, full: html, text
• Added more to 6 treatment descriptions.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
• Added updated expIds and accessions after adding age to the expVars. Redmine 5394.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 101, context: html, text, full: html, text
• Added clarifications for python virtual environment use.
  • python/virtual.txt - lines changed 4, context: html, text, full: html, text
• Fixed typo. Added extra i.
  • python/virtual.txt - lines changed 1, context: html, text, full: html, text
• Added 1 age and 1 treatment for Ren lab.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 12, context: html, text, full: html, text
• Changed link from hgdownload-test to hgdownload. Redmine #5986.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.html - lines changed 1, context: html, text, full: html, text
• Fixes found in code review Redmine 7133 1. Fixed the labels of diffProtA to be protocl instead of protein 3. Changed tissue catilage to tissue cartilage
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 8, context: html, text, full: html, text
• Fixed naming of differentiaion protocols to match diffProtA naming schema.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 30, context: html, text, full: html, text
• Renamed diffDMEM_7d to follow differntiation protocol treatments.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• Fixed special Beta character to use html formating. Fixes in Code Review. Redmine #7133.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Updated release date to be March. Redmine #4145
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html - lines changed 1, context: html, text, full: html, text
• Added 15 experiments to track. Redmine #4468.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 1771, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra - lines changed 407, context: html, text, full: html, text
• Fixed the vendorId and labels for BRG1 and INI1 which were switched.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
• Removed BMDM, as this is not a cell line, but a differentiation of Bone Marrow.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 17, context: html, text, full: html, text
• Shortened tag so that table names will fit table limit.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Shortened term for diffProt7d, doesn't follow convention, but is the only way to fit.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Added in missing treatment in the subGroup line that was forgotten in commit 98353eb7fbf5b2f0c5a2e3ee07c7e4f680181206.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra - lines changed 154, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.ra - lines changed 76, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.ra - lines changed 88, context: html, text, full: html, text
• Removed duplicate registration of Bone_marrow_derived_macrophage_differentiation to diffProtD_7d.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text