File Changes for hiram

v263_base to v264_preview (2012-02-14 to 2012-02-21) v264

• src/hg/hgGene/hgGeneData/Rat/rn4/links.ra
  • lines changed 7, context: html, text, full: html, text
    try a different select rule to get other organisms blast tabs
• src/hg/hgGene/rgdInfo.c
  • lines changed 1, context: html, text, full: html, text
    genes_rat table is now rgdGene2Raw
• src/hg/lib/kgXrefPrevious.sql
  • lines changed 22, context: html, text, full: html, text
    to supply a description for rn4 table kgXrefPrevious
• src/hg/makeDb/hgLoadWiggle/hgWiggle.c
  • lines changed 5, context: html, text, full: html, text
    add warning about 0-relative output vs. 1-relative output
• src/hg/makeDb/schema/all.joiner
  • lines changed 5, context: html, text, full: html, text
    adding identifier rn4KgPrevious as rn4 knownGene becomes knownGenePrevious
• src/hg/makeDb/trackDb/dog/canFam3/description.html
  • lines changed 129, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/dog/canFam3/gap.html
  • lines changed 64, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/dog/canFam3/gold.html
  • lines changed 23, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/dog/canFam3/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding canFam3 to the build
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
  • lines changed 14, context: html, text, full: html, text
    turn current known gene track in a previous known gene track
• src/hg/near/hgNear/hgNearData/Rat/rn4/columnDb.ra
  • lines changed 10, context: html, text, full: html, text
    eliminate codingSnps definition here, not needed for Rat
• src/hg/near/hgNear/hgNearData/Rat/rn4/orderDb.ra
  • lines changed 2, context: html, text, full: html, text
    add type abc table and column definitions to get alpha sort to work
  • lines changed 1, context: html, text, full: html, text
    order table to use is rgdGene2ToSymbol instead of rgdGene2ToUniProt
• src/product/scripts/kentSrcUpdate.sh
  • lines changed 1, context: html, text, full: html, text
    do not print out the error on the compile of gbWarn.c
• src/product/scripts/updateHtml.sh
  • lines changed 9, context: html, text, full: html, text
    proper exit on errors and avoid visiGene broken symLink