Commits for hiram

v263_base to v264_preview (2012-02-14 to 2012-02-21) v264

• eliminate codingSnps definition here, not needed for Rat
  • src/hg/near/hgNear/hgNearData/Rat/rn4/columnDb.ra - lines changed 10, context: html, text, full: html, text
• add type abc table and column definitions to get alpha sort to work
  • src/hg/near/hgNear/hgNearData/Rat/rn4/orderDb.ra - lines changed 2, context: html, text, full: html, text
• order table to use is rgdGene2ToSymbol instead of rgdGene2ToUniProt
  • src/hg/near/hgNear/hgNearData/Rat/rn4/orderDb.ra - lines changed 1, context: html, text, full: html, text
• proper exit on errors and avoid visiGene broken symLink
  • src/product/scripts/updateHtml.sh - lines changed 9, context: html, text, full: html, text
• genes_rat table is now rgdGene2Raw
  • src/hg/hgGene/rgdInfo.c - lines changed 1, context: html, text, full: html, text
• do not print out the error on the compile of gbWarn.c
  • src/product/scripts/kentSrcUpdate.sh - lines changed 1, context: html, text, full: html, text
• add warning about 0-relative output vs. 1-relative output
  • src/hg/makeDb/hgLoadWiggle/hgWiggle.c - lines changed 5, context: html, text, full: html, text
• turn current known gene track in a previous known gene track
  • src/hg/makeDb/trackDb/rat/rn4/trackDb.ra - lines changed 14, context: html, text, full: html, text
• adding identifier rn4KgPrevious as rn4 knownGene becomes knownGenePrevious
  • src/hg/makeDb/schema/all.joiner - lines changed 5, context: html, text, full: html, text
• initial files from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/dog/canFam3/description.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam3/gap.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam3/gold.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam3/trackDb.ra - lines changed 8, context: html, text, full: html, text
• adding canFam3 to the build
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• to supply a description for rn4 table kgXrefPrevious
  • src/hg/lib/kgXrefPrevious.sql - lines changed 22, context: html, text, full: html, text
• try a different select rule to get other organisms blast tabs
  • src/hg/hgGene/hgGeneData/Rat/rn4/links.ra - lines changed 7, context: html, text, full: html, text