All File Changes

v264_preview to v264_preview2 (2012-02-21 to 2012-02-28) v264

• python/lib/ucscgenomics/mkChangeNotes.py
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    forgot parenthesis
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    changed some error handling stuff in mkChangeNotes, and made revoked gbdbs removed from the changed gbdbs list
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf
  • lines changed 1, context: html, text, full: html, text
    Fixed the doc to document and removed rnaExtract as a variable for short
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlShortRnaSeq.daf
  • lines changed 1, context: html, text, full: html, text
    Fixed the doc to document and removed rnaExtract as a variable for short
• src/hg/encode/DAFs/3.0/mm9/wgEncodeLicrHistone.daf
  • lines changed 3, context: html, text, full: html, text
    changed the value of required field to no in alignment and raw signal views so that Lee can just reload the peak files
• src/hg/encode/DAFs/3.0/mm9/wgEncodeLicrTfbs.daf
  • lines changed 3, context: html, text, full: html, text
    changed the value of required field to no in alignment and raw signal views so that Lee can just reload the peak files
• src/hg/encode/encodeMkFilesList/encodeMkFilesList
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    fixed usage
• src/hg/encode/encodeQaInit/encodeQaInit
  • lines changed 9, context: html, text, full: html, text
    corrections requested by others
  • lines changed 7, context: html, text, full: html, text
    fixed the enw fiels mail to also have file size
• src/hg/encode/qaAddTrackReferences/qaAddTrackReferences
  • lines changed 11, context: html, text, full: html, text
    made it so that suthor count can be defined on commant line
• src/hg/hgGene/hgGeneData/links.ra
  • lines changed 13, context: html, text, full: html, text
    Addressing Redmine #4076, added links to Wikipedia and bioGPS to the links section of the gene details pages
• src/hg/hgGene/hgGeneData/otherOrgs.ra
  • lines changed 3, context: html, text, full: html, text
    changing rn4 rules
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    add a geneUrl rule to the Rat section
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    no otherIdSql needed, the RGD id is ready to go as is
• src/hg/hgTracks/cutterTrack.c
  • lines changed 7, context: html, text, full: html, text
    use maxWindowToDraw to show 'zoom in ... to view items' in track image when there are too many cutters to show (#6951)
• src/hg/hgTracks/hgTracks.c
  • lines changed 9, context: html, text, full: html, text
    remove ajaxWarnHandler code; I now stripJsEmbedded on client side which is more comprehensive b/c it catches all errors/warnings (include early errors)
  • lines changed 2, context: html, text, full: html, text
    convert showWarning calls to warn in javascript code (I'm cleaning up code by removing a reimplementation of the warn code)
• src/hg/hgTracks/simpleTracks.c
  • lines changed 1, context: html, text, full: html, text
    changes to t2g tracks to fuse all old tables into three tables on hgFixed plus one table per db
• src/hg/hgc/t2g.c
  • lines changed 39, context: html, text, full: html, text
    changes to t2g tracks to fuse all old tables into three tables on hgFixed plus one table per db
  • lines changed 1, context: html, text, full: html, text
    lowered maximum for t2g article snippet view
• src/hg/htdocs/ENCODE/downloads.html
  • lines changed 5, context: html, text, full: html, text
    adding GENCODE V10, redmine #6230
  • lines changed 5, context: html, text, full: html, text
    Added link for HAIB RNA-seq (redmine #1710)
• src/hg/htdocs/ENCODE/experiment_guidelines.html
  • lines changed 1, context: html, text, full: html, text
    Made changes suggested in Katrina's code review (redmine #7075)
• src/hg/htdocs/ENCODE/platform_characterization.html
  • lines changed 1, context: html, text, full: html, text
    Made changes suggested in Katrina's code review (redmine #7075)
• src/hg/htdocs/FAQ/FAQdownloads.html
  • lines changed 1, context: html, text, full: html, text
    Added a link to the downloads page per used feedback/suggestion.
  • lines changed 2, context: html, text, full: html, text
    Corrected link. This one can't be relative as the subdomain is different.
• src/hg/htdocs/goldenPath/help/customTrackText.html
  • lines changed 2, context: html, text, full: html, text
    Added missing quote and deleted extra space before a period.
• src/hg/htdocs/images/2.jpg
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    liftOver pennant icons for fr2 to fr3 and mm9 to mm10
• src/hg/htdocs/images/9.jpg
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    liftOver pennant icons for fr2 to fr3 and mm9 to mm10
• src/hg/js/ajax.js
  • lines changed 9, context: html, text, full: html, text
    convert showWarning calls to warn in javascript code (I'm cleaning up code by removing a reimplementation of the warn code)
• src/hg/js/autocomplete.js
  • lines changed 2, context: html, text, full: html, text
    convert showWarning calls to warn in javascript code (I'm cleaning up code by removing a reimplementation of the warn code)
• src/hg/js/encodeChipMatrix.js
  • lines changed 1, context: html, text, full: html, text
    Fix installation issues (now out of sandbox). Spinner needs absolute path to image.
• src/hg/js/encodeDataMatrix.js
  • lines changed 1, context: html, text, full: html, text
    Fix installation issues (now out of sandbox). Spinner needs absolute path to image.
• src/hg/js/encodeDataSummary.js
  • lines changed 1, context: html, text, full: html, text
    Fix installation issues (now out of sandbox). Spinner needs absolute path to image.
• src/hg/js/encodeProject.js
  • lines changed 138, context: html, text, full: html, text
    Cleanup for readability
• src/hg/js/hgTracks.js
  • lines changed 3, context: html, text, full: html, text
    use stripJsEmbedded to catch and report more errors/warnings in updateImgAndMap
  • lines changed 3, context: html, text, full: html, text
    remove obsolete json.err code
  • lines changed 8, context: html, text, full: html, text
    convert showWarning calls to warn in javascript code (I'm cleaning up code by removing a reimplementation of the warn code)
• src/hg/js/makefile
  • lines changed 2, context: html, text, full: html, text
    Fix installation issues (now out of sandbox). Spinner needs absolute path to image.
• src/hg/js/utils.js
  • lines changed 11, context: html, text, full: html, text
    add whatWeDid parameter to stripJsEmbedded; wordsmithing
  • lines changed 7, context: html, text, full: html, text
    add whatWeDid to stripHgErrors
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    window.scrollTo to showWarnBox to make sure user sees warnings
• src/hg/lib/kgXrefPrevious.as
  • lines changed 12, context: html, text, full: html, text
    only need the .as file, not the .sql file
• src/hg/lib/kgXrefPrevious.sql
  • lines changed 22, context: html, text, full: html, text
    only need the .as file, not the .sql file
• src/hg/makeDb/doc/ce10.txt
  • lines changed 17, context: html, text, full: html, text
    liftover construction ce10 to ce6
• src/hg/makeDb/doc/encodeDccHg19/gencodeV11.txt
  • lines changed 56, context: html, text, full: html, text
    added gencode V11
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeBroadHistone.release2.notes
  • lines changed 8, context: html, text, full: html, text
    Updated release notes. Redmine #4145.
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeOpenChromDnase.release2.notes
  • lines changed 908, context: html, text, full: html, text
    regenerated notes
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release3.notes
  • lines changed 64, context: html, text, full: html, text
    regenerated notes
• src/hg/makeDb/doc/encodeDccMm9/wgEncodeCshlLongRnaSeq.release1.notes
  • lines changed 610, context: html, text, full: html, text
    Added release 1 notes for track. Redmine #5986.
• src/hg/makeDb/doc/fr2.txt
  • lines changed 21, context: html, text, full: html, text
    construct liftOver from fr2 to fr3
• src/hg/makeDb/doc/fr3.txt
  • lines changed 151, context: html, text, full: html, text
    initial alignment done for 8-way multiz
  • lines changed 106, context: html, text, full: html, text
    gap annotated 8-way
  • lines changed 103, context: html, text, full: html, text
    frames annotation done on 8-way
  • lines changed 142, context: html, text, full: html, text
    phylo tree distance estimate constructed from all_est
  • lines changed 34, context: html, text, full: html, text
    rework the 4d analysis to use ensGenes lifted from fr2, much better branch lengths
  • lines changed 439, context: html, text, full: html, text
    phastCons and phyloP done
  • lines changed 81, context: html, text, full: html, text
    liftOver ensGene track from fr2 to fr3
  • lines changed 7, context: html, text, full: html, text
    trackVersion hgFixed entries for ensGene v65
  • lines changed 145, context: html, text, full: html, text
    construct hgPal alignment files and download files for 8-way conservation
  • lines changed 25, context: html, text, full: html, text
    joinerCheck done, download files, and in the pushQ
  • lines changed 2, context: html, text, full: html, text
    adding URL links for external information on this assembly
• src/hg/makeDb/doc/hg18.txt
  • lines changed 24, context: html, text, full: html, text
    Track #1656 (GWAS Catalog): Jen Jackson at Galaxy reported non-ASCIIcharacters in GWAS catalog table. Turns out these have been appearing since June '11. Some are UTF-8-encoded Unicode characters; others are not. I updated our pipeline to convert non-ASCII to HTML.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 5, context: html, text, full: html, text
    Track #1656 (GWAS Catalog): Jen Jackson at Galaxy reported non-ASCIIcharacters in GWAS catalog table. Turns out these have been appearing since June '11. Some are UTF-8-encoded Unicode characters; others are not. I updated our pipeline to convert non-ASCII to HTML.
• src/hg/makeDb/doc/mm10.txt
  • lines changed 77, context: html, text, full: html, text
    add lifted ensGene track from mm9
  • lines changed 7, context: html, text, full: html, text
    trackVersion hgFixed entries for ensGene v65
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 1, context: html, text, full: html, text
    added mm10
• src/hg/makeDb/schema/all.joiner
  • lines changed 8, context: html, text, full: html, text
    Split affyU133 identifier into two rules to accomodate difference in older and newer knownToU133 table.
  • lines changed 5, context: html, text, full: html, text
    adding fr3 rules and gadMor1, latCha1 and oreNil1 chains
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 23, context: html, text, full: html, text
    Changing tier to be non-cv determined
  • lines changed 67, context: html, text, full: html, text
    Added 4 cell lines for mouse.
  • lines changed 21, context: html, text, full: html, text
    Fix errors in vendorNames.
  • lines changed 1, context: html, text, full: html, text
    Fixed file name since you can't have / in filenames.
  • lines changed 756, context: html, text, full: html, text
    new celltypes
  • lines changed 535, context: html, text, full: html, text
    fixed merge conflicts
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    Added missing type to antibody registration.
  • lines changed 5, context: html, text, full: html, text
    Updated targets to remove vendorId and removed redudant labels for CycT1 and HMGN1 stating the target twice. Redmine #7060.
  • lines changed 14, context: html, text, full: html, text
    Changed var 'geo' for seqPlatform and platform to geoPlatformName to be more descriptive. Redmine #5111.
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    Removing Provisional tag
  • lines changed 37, context: html, text, full: html, text
    Removing the term species from the CV as it is really assembly, removing the one reference to species in hg18
  • lines changed 19, context: html, text, full: html, text
    Added 3 new differentation treatments. Also updated labels to be consistent on the diffProtA treatments.
  • lines changed 3, context: html, text, full: html, text
    Forgot type treatment.
  • lines changed 36, context: html, text, full: html, text
    Removed duplicate key and re-made NHLF stanza.
  • lines changed 15, context: html, text, full: html, text
    Added 3 new differentiation treatments.
  • lines changed 15, context: html, text, full: html, text
    added TBLR1 antibody
  • lines changed 11, context: html, text, full: html, text
    Adding orderUrls
  • lines changed 3, context: html, text, full: html, text
    Fixing a few more orderUrls
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    Fixing label for Spikeins to be Spike-ins. Redmine #5986.
  • lines changed 49, context: html, text, full: html, text
    Removing Gene Type with comments, see ticket #5111
  • lines changed 34, context: html, text, full: html, text
    Added 2 new cell lines for Ren lab.
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    Misspelled category.
• src/hg/makeDb/trackDb/cv/public/cv.ra
  • lines changed 125, context: html, text, full: html, text
    Remove duplicate comments that should only be at the end of the stanza. Redmine #7078.
• src/hg/makeDb/trackDb/fugu/fr3/cons8way.html
  • lines changed 398, context: html, text, full: html, text
    initial source under edit from xenTro3 9-way
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    override for ensGene lifted indicator and update 8-way description
• src/hg/makeDb/trackDb/fugu/fr3/description.html
  • lines changed 45, context: html, text, full: html, text
    cleaned up the assembly description
• src/hg/makeDb/trackDb/fugu/fr3/gap.html
  • lines changed 49, context: html, text, full: html, text
    brought up to date
• src/hg/makeDb/trackDb/fugu/fr3/gold.html
  • lines changed 38, context: html, text, full: html, text
    up to date with proper information
• src/hg/makeDb/trackDb/fugu/fr3/trackDb.ra
  • lines changed 104, context: html, text, full: html, text
    adding 8-way conservation tracks
  • lines changed 4, context: html, text, full: html, text
    override for ensGene lifted indicator and update 8-way description
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeNhgriBip.ra
  • lines changed 2, context: html, text, full: html, text
    Removing the term species from the CV as it is really assembly, removing the one reference to species in hg18
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeYaleChIPseq.ra
  • lines changed 1401, context: html, text, full: html, text
    releasing revoke of GM12878 NFKB(IgG-rab), redmine #6731
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeYaleChIPseq.ra
  • lines changed 1401, context: html, text, full: html, text
    releasing revoke of GM12878 NFKB(IgG-rab), redmine #6731
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    releasing revoke of GM12878 NFKB(IgG-rab), redmine #6731
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDNAseSuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDnaMethylSuper.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExonArray.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeExonArraySuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHistoneSuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRnaSeqSuper.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRnaSubcellLocSuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeTfBindingSuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html
  • lines changed 4, context: html, text, full: html, text
    updating Release notes so users know that we dropped the GM12878/NFKB (IgG-rab) experiments, redmine #6731
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.ra
  • lines changed 14, context: html, text, full: html, text
    releasing revoke of GM12878 NFKB(IgG-rab), redmine #6731
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
  • lines changed 458, context: html, text, full: html, text
    Fixes for Redmine #4145 1. Updated Cell line sorting to be by tier 2. Removed treatment on sortable columns as treatment is only in release 3 3. Updated ENCODE data freeze from post ENCODE Jan 2011 Freeze -> Mar 2012 Freeze Redmine #6581
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    Fixes in Redmine 4145. 14. Fixes typo in restricted until states '2001-10-09' instead of '2009-10-09' 15. Left off 'Freeze' when updating freeze date
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHmm.ra
  • lines changed 10, context: html, text, full: html, text
    Getting rid of the post Freeze dates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 3520, context: html, text, full: html, text
    Changing the defualts on this track
  • lines changed 919, context: html, text, full: html, text
    Added 5 more experiments
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 5855, context: html, text, full: html, text
    Adding a release 3 for CSHL Short with many new cell lines
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV7.ra
  • lines changed 15, context: html, text, full: html, text
    Cleaning out freeze date from GENCODE files, they do not want to have ENCODE Versions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV9.ra
  • lines changed 16, context: html, text, full: html, text
    Cleaning out freeze date from GENCODE files, they do not want to have ENCODE Versions
  • lines changed 1, context: html, text, full: html, text
    Getting rid of the post Freeze dates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra
  • lines changed 64, context: html, text, full: html, text
    changed post ENCDOE Jan 2011 Freeze to ENCODE Mar 2012 Freeze
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylArray.ra
  • lines changed 7, context: html, text, full: html, text
    changed post ENCDOE Jan 2011 Freeze to ENCODE Mar 2012 Freeze
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 233, context: html, text, full: html, text
    changed post ENCDOE Jan 2011 Freeze to ENCODE Mar 2012 Freeze
  • lines changed 4, context: html, text, full: html, text
    Getting rid of the post Freeze dates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 78, context: html, text, full: html, text
    short and long labels in trackDb, freeze date in etmaDb for haib rna seq fixes.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 8, context: html, text, full: html, text
    Getting rid of the post Freeze dates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 309, context: html, text, full: html, text
    added in expIds and dccAcceession
  • lines changed 202, context: html, text, full: html, text
    fixed gzip md5sum bug
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
  • lines changed 81, context: html, text, full: html, text
    fixing md5sums for open Chrom Faire
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromSynth.ra
  • lines changed 18, context: html, text, full: html, text
    fixing md5sum gzip bug
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 534, context: html, text, full: html, text
    Adding the TSSHMM as displayed view, and fixing the release3.html line
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 121, context: html, text, full: html, text
    changed post ENCDOE Jan 2011 Freeze to ENCODE Mar 2012 Freeze
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 58, context: html, text, full: html, text
    Changed post ENCODE Jan 2011 Freeze to ENCODE Mar 2012 Freeze. Redmine #6581.
  • lines changed 58, context: html, text, full: html, text
    Fixed typo in previous commit with change of ENCODE freeze data, left off Freeze. Redmine #6581.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra
  • lines changed 43, context: html, text, full: html, text
    changed post ENCDOE Jan 2011 Freeze to ENCODE Mar 2012 Freeze
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 453, context: html, text, full: html, text
    Changed post ENCODE Jan 2011 Freeze to ENCODE Mar 2012 Freeze. Redmine #6581.
  • lines changed 453, context: html, text, full: html, text
    Fixed typo in previous commit with change of ENCODE freeze data, left off Freeze. Redmine #6581.
  • lines changed 3137, context: html, text, full: html, text
    Added 25 submissions. Redmine #4486.
  • lines changed 3, context: html, text, full: html, text
    Fixed typo in dataVersion found by cronjob.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUchicagoTfbs.ra
  • lines changed 2361, context: html, text, full: html, text
    Added 10 experiments for track. Redmine #5697.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra
  • lines changed 39, context: html, text, full: html, text
    Changed post ENCODE Jan 2011 Freeze to ENCODE Mar 2012 Freeze. Redmine #6581.
  • lines changed 39, context: html, text, full: html, text
    Fixed typo in previous commit with change of ENCODE freeze data, left off Freeze. Redmine #6581.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 25, context: html, text, full: html, text
    expids for uw tfbs
  • lines changed 429, context: html, text, full: html, text
    added in expIds and dccAcceession
  • lines changed 409, context: html, text, full: html, text
    fixed gzip md5sum bug
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/makefile
  • lines changed 1, context: html, text, full: html, text
    Staging HAIB RNA-seq on beta (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeBroadHistone.ra
  • lines changed 14306, context: html, text, full: html, text
    Staging Broad Histone (Release 2) on beta (redmine #4145)
  • lines changed 458, context: html, text, full: html, text
    Venkat made some changes to the metadata (redmine #4145)
  • lines changed 459, context: html, text, full: html, text
    Venkat made changes to the metadata (redmine #4145)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeBroadHmm.ra
  • lines changed 19, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCshlShortRnaSeq.ra
  • lines changed 245, context: html, text, full: html, text
    Metadata on alpha was changed after making beta previously. Copying from alpha to beta and from beta to public. Staging track on RR. (redmine #1634)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibMethyl450.ra
  • lines changed 65, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibMethylRrbs.ra
  • lines changed 240, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibRnaSeq.ra
  • lines changed 4723, context: html, text, full: html, text
    Staging HAIB RNA-seq on beta (redmine #1710)
  • lines changed 78, context: html, text, full: html, text
    Matt updated the metadata with the new ENCODE Data Freeze date
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibTfbs.ra
  • lines changed 1520, context: html, text, full: html, text
    restaging HAIB TFBS (Release 2), redmine# 4487
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeOpenChromSynth.ra
  • lines changed 18, context: html, text, full: html, text
    fixing md5sums for uw dgf and open chro synth, staging on beta
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    Revert "fixing md5sums for uw dgf and open chro synth, staging on beta" This reverts commit c1596ce2a293cd85862df52171dab56432a6ae5f.
  • lines changed 18, context: html, text, full: html, text
    Applied Matt's md5sum metadata changes (redmine #7019)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 121, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeSydhNsome.ra
  • lines changed 43, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDgf.ra
  • lines changed 98, context: html, text, full: html, text
    fixing md5sums for uw dgf and open chro synth, staging on beta
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    Revert "fixing md5sums for uw dgf and open chro synth, staging on beta" This reverts commit c1596ce2a293cd85862df52171dab56432a6ae5f.
  • lines changed 98, context: html, text, full: html, text
    Applied Matt's md5sum metadata changes (redmine #7019)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwTfbs.ra
  • lines changed 67, context: html, text, full: html, text
    Staging UW CTCF Binding (Release 3) on beta (redmine #6323)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile
  • lines changed 1, context: html, text, full: html, text
    releasing Gencode V10 to the RR, redmine #6230
  • lines changed 1, context: html, text, full: html, text
    Staging HAIB RNA-seq (Release 1) on RR (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeBroadHmm.ra
  • lines changed 19, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCaltechRnaSeq.ra
  • lines changed 309, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCshlShortRnaSeq.ra
  • lines changed 9178, context: html, text, full: html, text
    Metadata on alpha was changed after making beta previously. Copying from alpha to beta and from beta to public. Staging track on RR. (redmine #1634)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGencodeV10.ra
  • lines changed 312, context: html, text, full: html, text
    releasing Gencode V10 to the RR, redmine #6230
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeHaibMethyl450.ra
  • lines changed 65, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeHaibMethylRrbs.ra
  • lines changed 240, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeHaibRnaSeq.ra
  • lines changed 4723, context: html, text, full: html, text
    Staging HAIB RNA-seq (Release 1) on RR (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeMapability.ra
  • lines changed 5, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeOpenChromChip.ra
  • lines changed 270, context: html, text, full: html, text
    releasing dccAccessions for wgEncodeOpenChromChip.ra wgEncodeOpenChromDnase.ra wgEncodeOpenChromFaire.ra wgEncodeSunyAlbanyTiling.ra, a few also have revised freeze dates: wgEncodeOpenChromChip.ra, wgEncodeOpenChromDnase.ra, and wgEncodeOpenChromFaire.ra, redmine 6067 and 6581
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeOpenChromDnase.ra
  • lines changed 331, context: html, text, full: html, text
    releasing dccAccessions for wgEncodeOpenChromChip.ra wgEncodeOpenChromDnase.ra wgEncodeOpenChromFaire.ra wgEncodeSunyAlbanyTiling.ra, a few also have revised freeze dates: wgEncodeOpenChromChip.ra, wgEncodeOpenChromDnase.ra, and wgEncodeOpenChromFaire.ra, redmine 6067 and 6581
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeOpenChromFaire.ra
  • lines changed 185, context: html, text, full: html, text
    releasing dccAccessions for wgEncodeOpenChromChip.ra wgEncodeOpenChromDnase.ra wgEncodeOpenChromFaire.ra wgEncodeSunyAlbanyTiling.ra, a few also have revised freeze dates: wgEncodeOpenChromChip.ra, wgEncodeOpenChromDnase.ra, and wgEncodeOpenChromFaire.ra, redmine 6067 and 6581
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeOpenChromSynth.ra
  • lines changed 18, context: html, text, full: html, text
    Applied Matt's md5sum metadata changes (redmine #7019)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 121, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeSunyAlbanyTiling.ra
  • lines changed 8, context: html, text, full: html, text
    releasing dccAccessions for wgEncodeOpenChromChip.ra wgEncodeOpenChromDnase.ra wgEncodeOpenChromFaire.ra wgEncodeSunyAlbanyTiling.ra, a few also have revised freeze dates: wgEncodeOpenChromChip.ra, wgEncodeOpenChromDnase.ra, and wgEncodeOpenChromFaire.ra, redmine 6067 and 6581
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeSydhNsome.ra
  • lines changed 43, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwDgf.ra
  • lines changed 98, context: html, text, full: html, text
    Applied Matt's md5sum metadata changes (redmine #7019)
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Added release 2 of track. Redmine #5697.
  • lines changed 1, context: html, text, full: html, text
    changed incldue for WGBS
  • lines changed 1, context: html, text, full: html, text
    Staging HAIB RNA-seq on beta (redmine #1710)
  • lines changed 2, context: html, text, full: html, text
    moving sydh histone to new release tag convention
  • lines changed 1, context: html, text, full: html, text
    trackDb.wgEncode.ra fix for duke affy exon
  • lines changed 2, context: html, text, full: html, text
    Renmaed wgEncodeDukeAffyExon.new.ra -> wgEncodeDukeAffyExon.release3.ra and fixed naming of wgEncodesydhHistone.release3.ra -> wgEncodeSydhHistone.release3.
  • lines changed 3, context: html, text, full: html, text
    moved mapability to new release tags
  • lines changed 1, context: html, text, full: html, text
    trackDb fix for openchrom faire
  • lines changed 1, context: html, text, full: html, text
    include statement for 5c
  • lines changed 2, context: html, text, full: html, text
    Metadata on alpha was changed after making beta previously. Copying from alpha to beta and from beta to public. Staging track on RR. (redmine #1634)
  • lines changed 1, context: html, text, full: html, text
    releasing Gencode V10 to the RR, redmine #6230
  • lines changed 1, context: html, text, full: html, text
    Staging HAIB RNA-seq (Release 1) on RR (redmine #1710)
  • lines changed 3, context: html, text, full: html, text
    Adding a release 3 for CSHL Short with many new cell lines
  • lines changed 2, context: html, text, full: html, text
    Staging Broad Histone (Release 2) on beta (redmine #4145)
  • lines changed 1, context: html, text, full: html, text
    Updated release 2 from new to release naming. Redmine #4486.
  • lines changed 2, context: html, text, full: html, text
    setting up patch for mapability html change
  • lines changed 2, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
  • lines changed 2, context: html, text, full: html, text
    Mapability track is done, no need for release 4
  • lines changed 1, context: html, text, full: html, text
    added gencode V11
  • lines changed 2, context: html, text, full: html, text
    fixed some long labels that need to be patched in
  • lines changed 2, context: html, text, full: html, text
    Applied Matt's patch to include spacing between units in long labels (redmine #1710)
  • lines changed 2, context: html, text, full: html, text
    Staging UW CTCF Binding (Release 3) on beta (redmine #6323)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html
  • lines changed 54, context: html, text, full: html, text
    Fixes in track Description for Redmine #4145 1. Updated sentence from "One to 10 nangograms" -> "A quantity of 1-10 ng" 2. Added phrase 'were added' after "except '-C 11' and '-H output_file'" 3. Added 'was' to phrase "....except for '-e' set to extend..." 4. Changed 'Accession' -> 'UCSC Accession' 5. Addded comma before 'e.g' 6. italicized 'e.g' 7. Changed link to Bernsetin lab to be https 8. Moved Contact to end of credits section and removed period 9. Made journal links to pubmed 10. Updated Data Release Policy to Track Standard
  • lines changed 3, context: html, text, full: html, text
    Fixes in Redmine #4145 1. Changed "A quantity of 1-10 ng of DNA were..." -> "A quantity of 1-10 ng of DNA was" 2. Added phrase 'were added' after "except '-C 11' and '-H output_file'" 3. Changed setence to "...except for '-e' which was set to extend..."
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.ra
  • lines changed 193, context: html, text, full: html, text
    Fixes for Redmine #4145 1. Updated Cell line sorting to be by tier 2. Removed treatment on sortable columns as treatment is only in release 3 3. Updated ENCODE data freeze from post ENCODE Jan 2011 Freeze -> Mar 2012 Freeze Redmine #6581
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.ra
  • lines changed 191, context: html, text, full: html, text
    Fixes for Redmine #4145 1. Updated Cell line sorting to be by tier 2. Removed treatment on sortable columns as treatment is only in release 3 3. Updated ENCODE data freeze from post ENCODE Jan 2011 Freeze -> Mar 2012 Freeze Redmine #6581
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSc.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.html
  • lines changed 5, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeChromSuper.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeChromSuper.new.html
  • lines changed 77, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra
  • lines changed 644, context: html, text, full: html, text
    Changing the defualts on this track
  • lines changed 433, context: html, text, full: html, text
    Added 5 more experiments
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.html
  • lines changed 8, context: html, text, full: html, text
    Release notes and a long label change for Steve ticket 1634
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.ra
  • lines changed 1, context: html, text, full: html, text
    Release notes and a long label change for Steve ticket 1634
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html
  • lines changed 145, context: html, text, full: html, text
    Adding a release 3 for CSHL Short with many new cell lines
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
  • lines changed 3590, context: html, text, full: html, text
    Adding a release 3 for CSHL Short with many new cell lines
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDNAseSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDnaMethylSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.new.html
  • lines changed 102, context: html, text, full: html, text
    moved duke affy exon to new convention for release tag
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.new.ra
  • lines changed 900, context: html, text, full: html, text
    moved duke affy exon to new convention for release tag
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.html
  • lines changed 102, context: html, text, full: html, text
    moved duke affy exon to new convention for release tag
  • lines changed 3, context: html, text, full: html, text
    fixed temporary release notes
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.ra
  • lines changed 900, context: html, text, full: html, text
    moved duke affy exon to new convention for release tag
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.html
  • lines changed 7, context: html, text, full: html, text
    fixing consistency of capitalization and periods in bulleted lists per Steve's code review, redmine #7074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.html
  • lines changed 333, context: html, text, full: html, text
    added gencode V11
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.ra
  • lines changed 223, context: html, text, full: html, text
    added gencode V11
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.html
  • lines changed 61, context: html, text, full: html, text
    renaming the bisulfite track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.ra
  • lines changed 84, context: html, text, full: html, text
    renaming the bisulfite track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.html
  • lines changed 121, context: html, text, full: html, text
    moving haib mehtyl rrbs to rlease 3 tags
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 1875, context: html, text, full: html, text
    moving haib mehtyl rrbs to rlease 3 tags
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html
  • lines changed 121, context: html, text, full: html, text
    moving haib mehtyl rrbs to rlease 3 tags
  • lines changed 2, context: html, text, full: html, text
    fixed temporary release notes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra
  • lines changed 1875, context: html, text, full: html, text
    moving haib mehtyl rrbs to rlease 3 tags
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylWgbs.html
  • lines changed 61, context: html, text, full: html, text
    renaming the bisulfite track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylWgbs.ra
  • lines changed 84, context: html, text, full: html, text
    renaming the bisulfite track
  • lines changed 60, context: html, text, full: html, text
    cleaned up test WGBS track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html
  • lines changed 16, context: html, text, full: html, text
    qa fixes to html
  • lines changed 1, context: html, text, full: html, text
    fixed genode misspelling
  • lines changed 1, context: html, text, full: html, text
    fixed misspelled gencode
  • lines changed 5, context: html, text, full: html, text
    added in naming convention for BAM reads
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.patch.ra
  • lines changed 870, context: html, text, full: html, text
    fixed some long labels that need to be patched in
  • lines changed 870, context: html, text, full: html, text
    Applied Matt's patch to include spacing between units in long labels (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 4, context: html, text, full: html, text
    fixed some last second short labels
  • lines changed 40, context: html, text, full: html, text
    short and long labels in trackDb, freeze date in etmaDb for haib rna seq fixes.
  • lines changed 2, context: html, text, full: html, text
    turned show names for alignments to off
  • lines changed 41, context: html, text, full: html, text
    fixed label in matrix and log and short
  • lines changed 1, context: html, text, full: html, text
    entity in label, ebcause underscores get translated into spaces by cgi
  • lines changed 1, context: html, text, full: html, text
    reordered treatments
  • lines changed 0, context: html, text, full: html, text
    Applied Matt's patch to include spacing between units in long labels (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibShRnaSeq.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra
  • lines changed 3, context: html, text, full: html, text
    fixed some qa stuff, removed replicate link for cv, and makde rep multi select
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHistoneSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html
  • lines changed 1, context: html, text, full: html, text
    fixed link at terry's request
  • lines changed 1, context: html, text, full: html, text
    Revert "fixed link at terry's request" This reverts commit b4e1b70c8476a11f71d048e6221a26fe4a2135a2.
  • lines changed 1, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.html
  • lines changed 146, context: html, text, full: html, text
    properly moving mapability name to release tag convention
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.ra
  • lines changed 137, context: html, text, full: html, text
    moved mapability to new release tags
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.patch.html
  • lines changed 146, context: html, text, full: html, text
    setting up patch for mapability html change
  • lines changed 146, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.patch.ra
  • lines changed 137, context: html, text, full: html, text
    setting up patch for mapability html change
  • lines changed 137, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.ra
  • lines changed 1, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
  • lines changed 1, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.html
  • lines changed 137, context: html, text, full: html, text
    moved mapability to new release tags
  • lines changed 177, context: html, text, full: html, text
    properly moving mapability name to release tag convention
  • lines changed 1, context: html, text, full: html, text
    setting up patch for mapability html change
  • lines changed 146, context: html, text, full: html, text
    Mapability track is done, no need for release 4
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.ra
  • lines changed 137, context: html, text, full: html, text
    properly moving mapability name to release tag convention
  • lines changed 1, context: html, text, full: html, text
    setting up patch for mapability html change
  • lines changed 137, context: html, text, full: html, text
    Mapability track is done, no need for release 4
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.html
  • lines changed 10, context: html, text, full: html, text
    release notes 2 first draft
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.ra
  • lines changed 277, context: html, text, full: html, text
    fixed short and long labels
  • lines changed 7, context: html, text, full: html, text
    removed bad track in trackDb
  • lines changed 36, context: html, text, full: html, text
    removed the parental cell lines for ones with donors
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.new.ra
  • lines changed 694, context: html, text, full: html, text
    moving open Chrom faire to release tags
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.html
  • lines changed 307, context: html, text, full: html, text
    moving open Chrom faire to release tags
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.ra
  • lines changed 694, context: html, text, full: html, text
    moving open Chrom faire to release tags
• src/hg/makeDb/trackDb/human/hg19/wgEncodeProtGenoSuper.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRbpSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra
  • lines changed 577, context: html, text, full: html, text
    Adding the TSSHMM as displayed view, and fixing the release3.html line
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRnaSeqSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRnaSubcellLocSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.html
  • lines changed 164, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.ra
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    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.html
  • lines changed 174, context: html, text, full: html, text
    moving sydh histone to new release tag convention
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra
  • lines changed 516, context: html, text, full: html, text
    moving sydh histone to new release tag convention
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.html
  • lines changed 174, context: html, text, full: html, text
    moving sydh histone to new release tag convention
  • lines changed 3, context: html, text, full: html, text
    temporary release notes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.ra
  • lines changed 516, context: html, text, full: html, text
    moving sydh histone to new release tag convention
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra
  • lines changed 5901, context: html, text, full: html, text
    Updated release 2 from new to release naming. Redmine #4486.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.html
  • lines changed 175, context: html, text, full: html, text
    Updated release 2 from new to release naming. Redmine #4486.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.ra
  • lines changed 5902, context: html, text, full: html, text
    Updated release 2 from new to release naming. Redmine #4486.
  • lines changed 1041, context: html, text, full: html, text
    Added 25 submissions. Redmine #4486.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeTfBindingSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.html
  • lines changed 185, context: html, text, full: html, text
    Added release 2 of track. Redmine #5697.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.ra
  • lines changed 179, context: html, text, full: html, text
    Added release 2 of track. Redmine #5697.
  • lines changed 467, context: html, text, full: html, text
    Added 10 experiments for track. Redmine #5697.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.new.ra
  • lines changed 12, context: html, text, full: html, text
    moved uw5c to release tag conventions
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.html
  • lines changed 131, context: html, text, full: html, text
    moved uw5c to release tag conventions
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.ra
  • lines changed 12, context: html, text, full: html, text
    moved uw5c to release tag conventions
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.new.html
  • lines changed 87, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.new.ra
  • lines changed 1475, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release3.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html
  • lines changed 11, context: html, text, full: html, text
    fixes to uw tfbs html for QA
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.ra
  • lines changed 8, context: html, text, full: html, text
    fixed determined by qA
• src/hg/makeDb/trackDb/mouse/mm10/description.html
  • lines changed 11, context: html, text, full: html, text
    Corrected NCBI link, and removed STS sample queries (no STS tracks exist yet)
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    adding lifted ensGene from mm9
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 7, context: html, text, full: html, text
    Added md5sum's. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 143, context: html, text, full: html, text
    Updated md5sum's. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra
  • lines changed 411, context: html, text, full: html, text
    updated the expId and dccAccession number for those new experiments submitted for release 2
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    resolving merge conflict caused by magic number, redo mdbUpdate etc
  • lines changed 27, context: html, text, full: html, text
    added stanza for Thymus H3K4me1 peak, submission ID 5755
  • lines changed 833, context: html, text, full: html, text
    update newly submitted peak files
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    update newly submitted signal and peak files for Liver E14.5 samples
  • lines changed 59, context: html, text, full: html, text
    Added md5sum's to tracks.
  • lines changed 117, context: html, text, full: html, text
    update with new submission
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra
  • lines changed 287, context: html, text, full: html, text
    update newly submitted peak files
  • lines changed 1171, context: html, text, full: html, text
    updated all the newly submitted input signal files
  • lines changed 62, context: html, text, full: html, text
    Added md5sum's to tracks.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 153, context: html, text, full: html, text
    Removed submission 4921, as this duplicated files in 4853 but with incorrect meta-data. Also fixes colliding md5sum issue. Redmine #5397.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 61, context: html, text, full: html, text
    Loaded replaced peaks and hotspots for 18 data sets. At the same time reloaded the Signal tables using the correct View name. Redmine #4468. Note #12.
  • lines changed 720, context: html, text, full: html, text
    Added 6 new submissions. Redmine #4468.
  • lines changed 67, context: html, text, full: html, text
    Updated md5sum's for track. Redmine #4468.
  • lines changed 90, context: html, text, full: html, text
    Updated object name to include age immortalized for cell lines. Error uncovered by Mike Pazin.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra
  • lines changed 239, context: html, text, full: html, text
    Added 2 more experiments. Redmine #4469.
  • lines changed 11, context: html, text, full: html, text
    Added md5sum's for track. Redmine #4469.
  • lines changed 77, context: html, text, full: html, text
    Updated object name to include age immortalized for cell lines. Error uncovered by Mike Pazin.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/makefile
  • lines changed 1, context: html, text, full: html, text
    Staging CSHL Long RNA-Seq on beta (redmine #5986)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeCshlLongRnaSeq.ra
  • lines changed 7265, context: html, text, full: html, text
    Staging CSHL Long RNA-Seq on beta (redmine #5986)
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    Removing species as a metaDb var, see ticket 5111
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Updated file names to new release naming structure. Redmine #4468.
  • lines changed 1, context: html, text, full: html, text
    Renamed new.ra to release naming schema.
  • lines changed 1, context: html, text, full: html, text
    Renamed files from new to release naming schema. Redmine #5696.
  • lines changed 1, context: html, text, full: html, text
    Staging CSHL Long RNA-Seq on beta (redmine #5986)
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechTfbs.new.ra
  • lines changed 668, context: html, text, full: html, text
    Renamed files from new to release naming schema. Redmine #5696.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechTfbs.release2.html
  • lines changed 154, context: html, text, full: html, text
    Renamed files from new to release naming schema. Redmine #5696.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechTfbs.release2.ra
  • lines changed 669, context: html, text, full: html, text
    Renamed files from new to release naming schema. Redmine #5696.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.html
  • lines changed 1, context: html, text, full: html, text
    Fixed incorrect species name referenced in track description. Redmine #5986.
  • lines changed 2, context: html, text, full: html, text
    Making links relative. Redmine #5986.
  • lines changed 20, context: html, text, full: html, text
    Fixes for Redmine #5986 5. Changed sentence from "ENCODE Constoria" -> "ENCODE Consortium" 6. Italicized i.e. 7. Updated last sentence in Tissue Samples to state : "Whenever possible biological replicates were obtained from litermates." Litermates is 1 word 8. Updated .9 -> 0.90 9. Redid citations with qaAddTrackReferences
  • lines changed 1, context: html, text, full: html, text
    7b. Added comma after possible and spelled littermates correctly. Redmine #5986.
  • lines changed 1, context: html, text, full: html, text
    Removed m from 'possible'. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.ra
  • lines changed 4, context: html, text, full: html, text
    Fixes found in Redmine #5986 2. Fixed ordering of Subcutaneous Fat Pad after Stomach 4. Fixed colors of Kidney to be the same color
  • lines changed 8, context: html, text, full: html, text
    2b. Fixed ordering of Subcutenous Fat Pad in the subTrack list. Redmine #5986.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra
  • lines changed 9, context: html, text, full: html, text
    added stanza for Thymus H3K4me1 peak, submission ID 5755
  • lines changed 288, context: html, text, full: html, text
    update newly submitted peak files
  • lines changed 63, context: html, text, full: html, text
    update newly submitted signal and peak files for Liver E14.5 samples
  • lines changed 156, context: html, text, full: html, text
    clean up short and long label
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.ra
  • lines changed 8, context: html, text, full: html, text
    clean up long label
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.ra
  • lines changed 99, context: html, text, full: html, text
    update newly submitted peak files
  • lines changed 1, context: html, text, full: html, text
    change input to INPUT in subGroup3 in top stanza
  • lines changed 10, context: html, text, full: html, text
    change all the factor=Input to factor=INPUT in each stanza
  • lines changed 19, context: html, text, full: html, text
    updated stanza for submission 5746, 5749, added PLAC entry to subGroup2 in top stanza
  • lines changed 1, context: html, text, full: html, text
    added F=F to subGroup4 in top stanza
  • lines changed 63, context: html, text, full: html, text
    updated all the newly submitted input signal files
  • lines changed 107, context: html, text, full: html, text
    clean up short and long labels
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.new.html
  • lines changed 173, context: html, text, full: html, text
    Renamed new.ra to release naming schema.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.new.ra
  • lines changed 18, context: html, text, full: html, text
    Removed submission 4921, as this duplicated files in 4853 but with incorrect meta-data. Also fixes colliding md5sum issue. Redmine #5397.
  • lines changed 969, context: html, text, full: html, text
    Renamed new.ra to release naming schema.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.release3.html
  • lines changed 173, context: html, text, full: html, text
    Renamed new.ra to release naming schema.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.release3.ra
  • lines changed 969, context: html, text, full: html, text
    Renamed new.ra to release naming schema.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.html
  • lines changed 112, context: html, text, full: html, text
    Updated file names to new release naming structure. Redmine #4468.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra
  • lines changed 68, context: html, text, full: html, text
    Loaded replaced peaks and hotspots for 18 data sets. At the same time reloaded the Signal tables using the correct View name. Redmine #4468. Note #12.
  • lines changed 2634, context: html, text, full: html, text
    Updated file names to new release naming structure. Redmine #4468.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.html
  • lines changed 112, context: html, text, full: html, text
    Updated file names to new release naming structure. Redmine #4468.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra
  • lines changed 2634, context: html, text, full: html, text
    Updated file names to new release naming structure. Redmine #4468.
  • lines changed 428, context: html, text, full: html, text
    Added 6 new submissions. Redmine #4468.
  • lines changed 49, context: html, text, full: html, text
    Added replicate 13 and 14 to attic. Redmine #4468.
  • lines changed 10, context: html, text, full: html, text
    Updated object name to include age immortalized for cell lines. Error uncovered by Mike Pazin.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra
  • lines changed 73, context: html, text, full: html, text
    Added 2 more experiments. Redmine #4469.
  • lines changed 49, context: html, text, full: html, text
    Updated object name to include age immortalized for cell lines. Error uncovered by Mike Pazin.
• src/hg/makeDb/trackDb/rat/rn4/knownGene.html
  • lines changed 114, context: html, text, full: html, text
    removing old html for known genes track. known genes has been replaced by rgd. Per #29
• src/hg/makeDb/trackDb/rat/rn4/knownGenePrevious.html
  • lines changed 3, context: html, text, full: html, text
    adding known genes build date and changing the track labels to be known gene rather than ucsc genes for rn4. Per #7064
  • lines changed 2, context: html, text, full: html, text
    removing more references in the html to UCSC Genes. Per #7064
  • lines changed 1, context: html, text, full: html, text
    removing another reference to UCSC. Per 7064
• src/hg/makeDb/trackDb/rat/rn4/rgdGene2.html
  • lines changed 6, context: html, text, full: html, text
    adding Hiram, fixing unmatched quotes, adding target=blank for #29
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    adding known genes build date and changing the track labels to be known gene rather than ucsc genes for rn4. Per #7064
• src/hg/makeDb/trackDb/trackDb.ra
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    changes to t2g tracks to fuse all old tables into three tables on hgFixed plus one table per db
• src/hg/oneShot/doOmimAv/doOmimAv.c
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    more moving things around #6943
• src/hg/oneShot/doOmimAv/makefile
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    more moving things around #6943
• src/hg/oneShot/doOmimGene2/doOmimGene2.c
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    more moving for Omim build #6943
• src/hg/oneShot/doOmimGene2/makefile
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    more moving for Omim build #6943
• src/hg/oneShot/doOmimGeneSymbols/doOmimGeneSymbols.c
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    moving various pieces of code to build the omim table into one place #6943
• src/hg/oneShot/doOmimGeneSymbols/makefile
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    moving various pieces of code to build the omim table into one place #6943
• src/hg/oneShot/doOmimLocation/doOmimLocation.c
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    more moving for Omim build #6943
• src/hg/oneShot/doOmimLocation/makefile
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    more moving for Omim build #6943
• src/hg/utils/automation/liftRMAlign.pl
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    avoid warning errors when maybeSuffix is not defined
• src/hg/utils/automation/unigene.csh
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    change fan to me in unigene mail
• src/hg/utils/omim/buildOmimTracks.csh
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    more moving things around #6943
• src/hg/utils/omim/checkOmim.sh
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    more moving things around #6943
• src/hg/utils/omim/doOmimAv/doOmimAv.c
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    more moving things around #6943
• src/hg/utils/omim/doOmimAv/makefile
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    more moving things around #6943
• src/hg/utils/omim/doOmimGene2/doOmimGene2.c
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    more moving for Omim build #6943
• src/hg/utils/omim/doOmimGene2/makefile
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    more moving for Omim build #6943
• src/hg/utils/omim/doOmimGeneSymbols/doOmimGeneSymbols.c
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    more moving things around #6943
• src/hg/utils/omim/doOmimGeneSymbols/makefile
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    more moving things around #6943
• src/hg/utils/omim/doOmimLocation/doOmimLocation.c
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    more moving for Omim build #6943
• src/hg/utils/omim/doOmimLocation/makefile
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    more moving for Omim build #6943
• src/hg/utils/omim/parseGeneMap.pl
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    more moving things around #6943
• src/lib/htmshell.c
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    window.scrollTo to showWarnBox to make sure user sees warnings
• src/utils/omim/buildOmimTracks.csh
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    moving various pieces of code to build the omim table into one place #6943
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    more moving things around #6943
• src/utils/omim/checkOmim.sh
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    moving various pieces of code to build the omim table into one place #6943
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    more moving things around #6943
• src/utils/omim/doOmimGeneSymbols/doOmimGeneSymbols.c
  • lines changed 81, context: html, text, full: html, text
    moving various pieces of code to build the omim table into one place #6943
  • lines changed 81, context: html, text, full: html, text
    more moving things around #6943
• src/utils/omim/doOmimGeneSymbols/makefile
  • lines changed 38, context: html, text, full: html, text
    moving various pieces of code to build the omim table into one place #6943
  • lines changed 38, context: html, text, full: html, text
    more moving things around #6943
• src/utils/omim/parseGeneMap.pl
  • lines changed 221, context: html, text, full: html, text
    moving various pieces of code to build the omim table into one place #6943
  • lines changed 221, context: html, text, full: html, text
    more moving things around #6943
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v264 preview2
• src/utils/qa/weeklybld/doHgNearTestRobot.csh
  • lines changed 14, context: html, text, full: html, text
    Fixed this script (really this time) to detect when the hgNearTest log doesn't get written (like in v263) and when it actually gets non-zero errors.
• src/utils/qa/weeklybld/doHgTablesTestRobot.csh
  • lines changed 3, context: html, text, full: html, text
    Second attempt to stop hgTableTestRobot from reporting errors when there are none. Assigning grep results to variables goes not keep line feeds, so counting lines is invalid. Redmine 6486. Also decided an imperfect test for errors in the TrackCheckRobot was better than none at all.
• src/utils/qa/weeklybld/doTrackCheckRobot.csh
  • lines changed 6, context: html, text, full: html, text
    Second attempt to stop hgTableTestRobot from reporting errors when there are none. Assigning grep results to variables goes not keep line feeds, so counting lines is invalid. Redmine 6486. Also decided an imperfect test for errors in the TrackCheckRobot was better than none at all.

• lines changed: 130051
• files changed: 435