File Changes for steve

v264_preview to v264_preview2 (2012-02-21 to 2012-02-28) v264

• src/hg/htdocs/ENCODE/downloads.html
  • lines changed 5, context: html, text, full: html, text
    Added link for HAIB RNA-seq (redmine #1710)
• src/hg/htdocs/ENCODE/experiment_guidelines.html
  • lines changed 1, context: html, text, full: html, text
    Made changes suggested in Katrina's code review (redmine #7075)
• src/hg/htdocs/ENCODE/platform_characterization.html
  • lines changed 1, context: html, text, full: html, text
    Made changes suggested in Katrina's code review (redmine #7075)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDNAseSuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDnaMethylSuper.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExonArray.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeExonArraySuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHistoneSuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRnaSeqSuper.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRnaSubcellLocSuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeTfBindingSuper.html
  • lines changed 4, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/makefile
  • lines changed 1, context: html, text, full: html, text
    Staging HAIB RNA-seq on beta (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeBroadHistone.ra
  • lines changed 14306, context: html, text, full: html, text
    Staging Broad Histone (Release 2) on beta (redmine #4145)
  • lines changed 458, context: html, text, full: html, text
    Venkat made some changes to the metadata (redmine #4145)
  • lines changed 459, context: html, text, full: html, text
    Venkat made changes to the metadata (redmine #4145)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeBroadHmm.ra
  • lines changed 19, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCshlShortRnaSeq.ra
  • lines changed 245, context: html, text, full: html, text
    Metadata on alpha was changed after making beta previously. Copying from alpha to beta and from beta to public. Staging track on RR. (redmine #1634)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibMethyl450.ra
  • lines changed 65, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibMethylRrbs.ra
  • lines changed 240, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibRnaSeq.ra
  • lines changed 4723, context: html, text, full: html, text
    Staging HAIB RNA-seq on beta (redmine #1710)
  • lines changed 78, context: html, text, full: html, text
    Matt updated the metadata with the new ENCODE Data Freeze date
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeOpenChromSynth.ra
  • lines changed 18, context: html, text, full: html, text
    Applied Matt's md5sum metadata changes (redmine #7019)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 121, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeSydhNsome.ra
  • lines changed 43, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDgf.ra
  • lines changed 98, context: html, text, full: html, text
    Applied Matt's md5sum metadata changes (redmine #7019)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwTfbs.ra
  • lines changed 67, context: html, text, full: html, text
    Staging UW CTCF Binding (Release 3) on beta (redmine #6323)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile
  • lines changed 1, context: html, text, full: html, text
    Staging HAIB RNA-seq (Release 1) on RR (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeBroadHmm.ra
  • lines changed 19, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCaltechRnaSeq.ra
  • lines changed 309, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCshlShortRnaSeq.ra
  • lines changed 9178, context: html, text, full: html, text
    Metadata on alpha was changed after making beta previously. Copying from alpha to beta and from beta to public. Staging track on RR. (redmine #1634)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeHaibMethyl450.ra
  • lines changed 65, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeHaibMethylRrbs.ra
  • lines changed 240, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeHaibRnaSeq.ra
  • lines changed 4723, context: html, text, full: html, text
    Staging HAIB RNA-seq (Release 1) on RR (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeMapability.ra
  • lines changed 5, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeOpenChromSynth.ra
  • lines changed 18, context: html, text, full: html, text
    Applied Matt's md5sum metadata changes (redmine #7019)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 121, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeSydhNsome.ra
  • lines changed 43, context: html, text, full: html, text
    Updated metadata with new freeze dates. New sex for items in wgEncodeHaibMethyl450.ra and wgEncodeHaibMethylRrbs.ra. New geoSampleAccessions in wgEncodeSunyAlbanyGeneSt.ra. (redmine #6581)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwDgf.ra
  • lines changed 98, context: html, text, full: html, text
    Applied Matt's md5sum metadata changes (redmine #7019)
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Staging HAIB RNA-seq on beta (redmine #1710)
  • lines changed 2, context: html, text, full: html, text
    Metadata on alpha was changed after making beta previously. Copying from alpha to beta and from beta to public. Staging track on RR. (redmine #1634)
  • lines changed 1, context: html, text, full: html, text
    Staging HAIB RNA-seq (Release 1) on RR (redmine #1710)
  • lines changed 2, context: html, text, full: html, text
    Staging Broad Histone (Release 2) on beta (redmine #4145)
  • lines changed 2, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
  • lines changed 2, context: html, text, full: html, text
    Applied Matt's patch to include spacing between units in long labels (redmine #1710)
  • lines changed 2, context: html, text, full: html, text
    Staging UW CTCF Binding (Release 3) on beta (redmine #6323)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSc.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.html
  • lines changed 5, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeChromSuper.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.html
  • lines changed 3, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDNAseSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDnaMethylSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.patch.ra
  • lines changed 870, context: html, text, full: html, text
    Applied Matt's patch to include spacing between units in long labels (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 0, context: html, text, full: html, text
    Applied Matt's patch to include spacing between units in long labels (redmine #1710)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibShRnaSeq.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHistoneSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html
  • lines changed 1, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.patch.html
  • lines changed 146, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.patch.ra
  • lines changed 137, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.ra
  • lines changed 1, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
  • lines changed 1, context: html, text, full: html, text
    Applied Matt's patch (redmine #7115)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeProtGenoSuper.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRbpSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRnaSeqSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRnaSubcellLocSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeTfBindingSuper.html
  • lines changed 2, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release3.html
  • lines changed 1, context: html, text, full: html, text
    Converted hard links to relative links. Also edited previous changes to hg18 because they didn't require any special javascripting. (redmine #6526)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/makefile
  • lines changed 1, context: html, text, full: html, text
    Staging CSHL Long RNA-Seq on beta (redmine #5986)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeCshlLongRnaSeq.ra
  • lines changed 7265, context: html, text, full: html, text
    Staging CSHL Long RNA-Seq on beta (redmine #5986)
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Staging CSHL Long RNA-Seq on beta (redmine #5986)