Commits for hiram

v264_base to v265_preview (2012-03-06 to 2012-03-13) v265

• redmine issue 7108
  • src/hg/htdocs/indexIntro.html - lines changed 1, context: html, text, full: html, text
• updated to new XML schema from NCBI
  • src/hg/utils/automation/grcIncidentDb.pl - lines changed 303, context: html, text, full: html, text
• updated to new NCBI XML schema
  • src/hg/utils/automation/ncbiIncidentDb.pl - lines changed 174, context: html, text, full: html, text
• change description comment due to new printout of extra bigBed fields change
  • src/hg/lib/grcIncidentDb.as - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/ncbiIncidentDb.as - lines changed 1, context: html, text, full: html, text
• running mm10 lastz and removed some spaces at the ends of lines
  • src/hg/makeDb/doc/hg19.txt - lines changed 55, context: html, text, full: html, text
• swap mm10 lastz done
  • src/hg/makeDb/doc/hg19.txt - lines changed 10, context: html, text, full: html, text
• swap mm10 to hg19 lastz done
  • src/hg/makeDb/doc/mm10.txt - lines changed 21, context: html, text, full: html, text
• running lastz for rn4 gorGor3 nomLeu1 and rheMac3
  • src/hg/makeDb/doc/mm10.txt - lines changed 279, context: html, text, full: html, text
• running lastz for panTro3 ponAbe2
  • src/hg/makeDb/doc/hg19.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/panTro3.txt - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/doc/ponAbe2.txt - lines changed 49, context: html, text, full: html, text
• completed several lastz runs on mm10
  • src/hg/makeDb/doc/mm10.txt - lines changed 139, context: html, text, full: html, text
  • src/hg/makeDb/doc/ponAbe2.txt - lines changed 14, context: html, text, full: html, text
• construct UCSC to Ensembl name translation and load v65 Ensembl genes
  • src/hg/makeDb/doc/panTro4.txt - lines changed 66, context: html, text, full: html, text
• running papHam1 saiBol1 calJac3 panTro4 tarSyr1 lastz
  • src/hg/makeDb/doc/mm10.txt - lines changed 223, context: html, text, full: html, text
• lastz runs to mm10 coming to completion
  • src/hg/makeDb/doc/mm10.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/panTro3.txt - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/doc/papHam1.txt - lines changed 22, context: html, text, full: html, text
• grouping primate chain net tracks into one control
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.chainNet.ra - lines changed 226, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 3, context: html, text, full: html, text
• initial files from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/bushbaby/otoGar3/description.html - lines changed 132, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bushbaby/otoGar3/gap.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bushbaby/otoGar3/gold.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bushbaby/otoGar3/trackDb.ra - lines changed 8, context: html, text, full: html, text
• adding otoGar3 to the build
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• initial browser built and masking started
  • src/hg/makeDb/doc/otoGar3.txt - lines changed 371, context: html, text, full: html, text