Commits for vsmalladi

v264_base to v265_preview (2012-03-06 to 2012-03-13) v265

• Found broken links on public. Correct stanzas with correct protocol document on alpha. Replaced lines with missing on beta and public to ensure links aren't broken and allow changes to propagate through cv review process.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 3, context: html, text, full: html, text
• Fixed broken links found by cron job. Fixed typo in RAD21 link for validation document in all cv's. Updated link for RFX5_(200-401-194).
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 1, context: html, text, full: html, text
• Removed sentence for object, on request by lab. Redmine #3794.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 7, context: html, text, full: html, text
• Added in information regarding the python version to use.
  • python/virtual.txt - lines changed 3, context: html, text, full: html, text
• Reset the tag for IMMORTAL from IMMOR to IMMORTAL.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Changes that pertain to Redmine #7005 1. make tableName searchable: freeText 2. Update label for tableName to be "Table name at UCSC" 3. When choosing dropdown for "Table name at UCSC", change utils.js so this is no link to otherTerms.html page. For example see: "Treatment" 4. Remove subId "Submission ID" as being searchable on dev,beta and public.
  • src/hg/js/utils.js - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• Changes for Redmine #7100 1. Added info link for "Experiment (Assay) type" 2. Suppressed info link for: - "GEO sample accession" - "Obtained by" - "UCSC Accession" - "Experimet ID" *NOTE: Only suppressed on DEV
  • src/hg/js/utils.js - lines changed 4, context: html, text, full: html, text
• Added back reigstration for BMDM cells after talking with lab to determine this was the correct registration and removed differentiation treatment as this is not needed now.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 24, context: html, text, full: html, text
• Changes approved from cv.ra review. Redmine #7200.
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 1264, context: html, text, full: html, text
• Fixed tags misspelling Provisional.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Removed term type as searchable as only a few datasets on hg18 have this metaData term. Redmine #7100.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text