File Changes for kent

v266_preview2 to v266_base (2012-04-17 to 2012-04-24) v266

• python/users/kent/django/makefile
  • lines changed 2, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/__init__.py
  • lines changed 0, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/cvDb/README
  • lines changed 7, context: html, text, full: html, text
    Putting in docString style module comments as per style guide.
• python/users/kent/django/mysite/cvDb/__init__.py
  • lines changed 0, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/cvDb/admin.py
  • lines changed 42, context: html, text, full: html, text
    Adding experiments with Django.
  • lines changed 8, context: html, text, full: html, text
    Putting in docString style module comments as per style guide.
• python/users/kent/django/mysite/cvDb/makefile
  • lines changed 2, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/cvDb/models.py
  • lines changed 757, context: html, text, full: html, text
    Adding experiments with Django.
  • lines changed 2, context: html, text, full: html, text
    Putting in docString style module comments as per style guide.
• python/users/kent/django/mysite/cvDb/tests.py
  • lines changed 16, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/cvDb/urls.py
  • lines changed 13, context: html, text, full: html, text
    Adding experiments with Django.
  • lines changed 5, context: html, text, full: html, text
    Putting in docString style module comments as per style guide.
• python/users/kent/django/mysite/cvDb/views.py
  • lines changed 1, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/jkSp/__init__.py
  • lines changed 0, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/jkSp/admin.py
  • lines changed 53, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/jkSp/models.py
  • lines changed 326, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/jkSp/tests.py
  • lines changed 16, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/jkSp/views.py
  • lines changed 1, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/makefile
  • lines changed 3, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/mysite/manage.py
  • lines changed 14, context: html, text, full: html, text
    Adding experiments with Django.
  • lines changed 7, context: html, text, full: html, text
    Putting in docString style module comments as per style guide.
• python/users/kent/django/mysite/settings.py
  • lines changed 149, context: html, text, full: html, text
    Adding experiments with Django.
  • lines changed 6, context: html, text, full: html, text
    Putting in docString style module comments as per style guide.
• python/users/kent/django/mysite/urls.py
  • lines changed 18, context: html, text, full: html, text
    Adding experiments with Django.
  • lines changed 5, context: html, text, full: html, text
    Putting in docString style module comments as per style guide.
• python/users/kent/django/templates/404.html
  • lines changed 2, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/templates/admin/base_site.html
  • lines changed 10, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/templates/cvDb/index.html
  • lines changed 9, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/templates/polls/detail.html
  • lines changed 12, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/templates/polls/index.html
  • lines changed 9, context: html, text, full: html, text
    Adding experiments with Django.
• python/users/kent/django/templates/polls/results.html
  • lines changed 9, context: html, text, full: html, text
    Adding experiments with Django.
• src/README
  • lines changed 8, context: html, text, full: html, text
    Remembered we need real tabs for the makefiles.
• src/hg/lib/hui.c
  • lines changed 2, context: html, text, full: html, text
    Dealing with a name conflict I just introduced between lib and hg/lib.
• src/hg/oneShot/encodeExpToCvDb/doIt
  • lines changed 1, context: html, text, full: html, text
    Some of this module to help turn encodeExp table into something in cvDb relational database is working.
• src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c
  • lines changed 169, context: html, text, full: html, text
    Some of this module to help turn encodeExp table into something in cvDb relational database is working.
  • lines changed 187, context: html, text, full: html, text
    Creating tab separated file and django model for an 'experiment' table based on hgFixed.encodeExps and hg19.metaDb
  • lines changed 93, context: html, text, full: html, text
    Further work, mostly making it generate series table too.
  • lines changed 110, context: html, text, full: html, text
    Adding results table.
• src/hg/oneShot/encodeExpToCvDb/exp.sql
  • lines changed 36, context: html, text, full: html, text
    Sort of a pain to get Django to generate this, so committing it.
• src/hg/oneShot/encodeExpToCvDb/makefile
  • lines changed 18, context: html, text, full: html, text
    Some of this module to help turn encodeExp table into something in cvDb relational database is working.
• src/hg/oneShot/encodeExpToCvDb/results.sql
  • lines changed 13, context: html, text, full: html, text
    Adding results table.
• src/hg/oneShot/encodeExpToCvDb/series.sql
  • lines changed 8, context: html, text, full: html, text
    Further work, mostly making it generate series table too.
• src/hg/oneShot/testCvToSql/README
  • lines changed 2, context: html, text, full: html, text
    A little README for the testCvToSql dir.
• src/hg/oneShot/testCvToSql/splitAntibody.ra
  • lines changed 7, context: html, text, full: html, text
    Adding some scripting to post-process cv database tab and model files.
• src/hg/oneShot/testCvToSql/splitAntibody.sql
  • lines changed 34, context: html, text, full: html, text
    Adding a few more files will want to reuse come the true conversion.
• src/hg/oneShot/testCvToSql/splitAntibodyModel.py
  • lines changed 47, context: html, text, full: html, text
    Adding some scripting to post-process cv database tab and model files.
  • lines changed 31, context: html, text, full: html, text
    Adding a few more files will want to reuse come the true conversion.
• src/hg/oneShot/testCvToSql/testCvToSql.c
  • lines changed 141, context: html, text, full: html, text
    Making it do direct SQL create table output. Adding prefix for tables for django
  • lines changed 94, context: html, text, full: html, text
    Adding django output
  • lines changed 18, context: html, text, full: html, text
    Adding missing parenthesis to Django output. Adding admin section to Django output.
  • lines changed 36, context: html, text, full: html, text
    Separating django output into separate files.
  • lines changed 5, context: html, text, full: html, text
    Fixing it so have control over table name so Django doesn't stomp camelCasing word separators.
  • lines changed 246, context: html, text, full: html, text
    Simplifying things a bit - removing table splitting parts.
  • lines changed 2, context: html, text, full: html, text
    Changing class level comment to be in doc string format.
• src/hg/oneShot/testCvToSql/tryIt
  • lines changed 37, context: html, text, full: html, text
    Adding some scripting to post-process cv database tab and model files.
• src/hg/protein/spToDb/spDb.sql
  • lines changed 16, context: html, text, full: html, text
    Moving featureId so easier to do foreign key constraints.
• src/hg/utils/verticalSplitSqlTable/makefile
  • lines changed 21, context: html, text, full: html, text
    Starting program that will split a table into two vertically.
  • lines changed 6, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 26, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.as
  • lines changed 9, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 9, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.tab
  • lines changed 81, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 81, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.as
  • lines changed 17, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 17, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.tab
  • lines changed 100, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 100, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/tests/expected/mergeErrs.txt
  • lines changed 29, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 29, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/tests/in/antibody.as
  • lines changed 20, context: html, text, full: html, text
    Starting program that will split a table into two vertically.
  • lines changed 20, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/tests/in/antibody.split
  • lines changed 7, context: html, text, full: html, text
    Starting program that will split a table into two vertically.
  • lines changed 1, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 7, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/tests/in/antibody.tab
  • lines changed 100, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 100, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/hg/utils/verticalSplitSqlTable/verticalSplitSqlTable.c
  • lines changed 176, context: html, text, full: html, text
    Starting program that will split a table into two vertically.
  • lines changed 187, context: html, text, full: html, text
    Vertical table splitter seems to work.
  • lines changed 5, context: html, text, full: html, text
    Improving usage statement.
  • lines changed 1, context: html, text, full: html, text
    Improving usage statement.
  • lines changed 349, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/inc/asParse.h
  • lines changed 3, context: html, text, full: html, text
    Adding asColumnFind function.
• src/inc/common.h
  • lines changed 3, context: html, text, full: html, text
    Adding trimLastChar function.
• src/lib/asParse.c
  • lines changed 11, context: html, text, full: html, text
    Adding asColumnFind function.
  • lines changed 8, context: html, text, full: html, text
    Dealing with a name conflict I just introduced between lib and hg/lib.
• src/lib/common.c
  • lines changed 8, context: html, text, full: html, text
    Adding trimLastChar function.
• src/lib/obscure.c
  • lines changed 1, context: html, text, full: html, text
    Fixing an old typo in comment.
• src/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    Addint verticalSplitSqlTable to makefile.
• src/utils/replaceTextBetween/makefile
  • lines changed 24, context: html, text, full: html, text
    Another little text utility seems to work.
• src/utils/replaceTextBetween/replaceTextBetween.c
  • lines changed 76, context: html, text, full: html, text
    Another little text utility seems to work.
• src/utils/replaceTextBetween/testExpected
  • lines changed 1, context: html, text, full: html, text
    Another little text utility seems to work.
• src/utils/replaceTextBetween/testExpectedWithEnds
  • lines changed 1, context: html, text, full: html, text
    Another little text utility seems to work.
• src/utils/replaceTextBetween/testInner
  • lines changed 1, context: html, text, full: html, text
    Another little text utility seems to work.
• src/utils/replaceTextBetween/testOuter
  • lines changed 1, context: html, text, full: html, text
    Another little text utility seems to work.
• src/utils/textBetween/makefile
  • lines changed 18, context: html, text, full: html, text
    A handy little text utility, sort of a text PCR.
• src/utils/textBetween/textBetween.c
  • lines changed 54, context: html, text, full: html, text
    A handy little text utility, sort of a text PCR.
  • lines changed 1, context: html, text, full: html, text
    Fixing usage message.
• src/utils/verticalSplitSqlTable/makefile
  • lines changed 26, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
  • lines changed 2, context: html, text, full: html, text
    Fixing up makefile after directory move.
• src/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.as
  • lines changed 9, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.tab
  • lines changed 81, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.as
  • lines changed 17, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.tab
  • lines changed 100, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/utils/verticalSplitSqlTable/tests/expected/mergeErrs.txt
  • lines changed 29, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/utils/verticalSplitSqlTable/tests/in/antibody.as
  • lines changed 20, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/utils/verticalSplitSqlTable/tests/in/antibody.split
  • lines changed 7, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/utils/verticalSplitSqlTable/tests/in/antibody.tab
  • lines changed 100, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
• src/utils/verticalSplitSqlTable/verticalSplitSqlTable.c
  • lines changed 349, context: html, text, full: html, text
    Moving out of hg since no need for MySQL.
  • lines changed 2, context: html, text, full: html, text
    Clarifying usage message.