Commits for kent
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v266_preview2 to v266_base (2012-04-17 to 2012-04-24) v266
- Remembered we need real tabs for the makefiles.
- Making it do direct SQL create table output. Adding prefix for tables for django
- src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 141, context: html, text, full: html, text
- Adding django output
- src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 94, context: html, text, full: html, text
- Adding missing parenthesis to Django output. Adding admin section to Django output.
- src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 18, context: html, text, full: html, text
- Separating django output into separate files.
- src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 36, context: html, text, full: html, text
- Fixing it so have control over table name so Django doesn't stomp camelCasing word separators.
- src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 5, context: html, text, full: html, text
- Moving featureId so easier to do foreign key constraints.
- src/hg/protein/spToDb/spDb.sql - lines changed 16, context: html, text, full: html, text
- Simplifying things a bit - removing table splitting parts.
- src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 246, context: html, text, full: html, text
- Starting program that will split a table into two vertically.
- src/hg/utils/verticalSplitSqlTable/makefile - lines changed 21, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/in/antibody.as - lines changed 20, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/in/antibody.split - lines changed 7, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/verticalSplitSqlTable.c - lines changed 176, context: html, text, full: html, text
- Adding trimLastChar function.
- Adding asColumnFind function.
- Fixing an old typo in comment.
- Vertical table splitter seems to work.
- src/hg/utils/verticalSplitSqlTable/makefile - lines changed 6, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.as - lines changed 9, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.tab - lines changed 81, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.as - lines changed 17, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.tab - lines changed 100, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/mergeErrs.txt - lines changed 29, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/in/antibody.split - lines changed 1, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/in/antibody.tab - lines changed 100, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/verticalSplitSqlTable.c - lines changed 187, context: html, text, full: html, text
- Improving usage statement.
- src/hg/utils/verticalSplitSqlTable/verticalSplitSqlTable.c - lines changed 5, context: html, text, full: html, text
- Improving usage statement.
- src/hg/utils/verticalSplitSqlTable/verticalSplitSqlTable.c - lines changed 1, context: html, text, full: html, text
- Moving out of hg since no need for MySQL.
- src/hg/utils/verticalSplitSqlTable/makefile - lines changed 26, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.as - lines changed 9, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.tab - lines changed 81, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.as - lines changed 17, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.tab - lines changed 100, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/expected/mergeErrs.txt - lines changed 29, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/in/antibody.as - lines changed 20, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/in/antibody.split - lines changed 7, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/tests/in/antibody.tab - lines changed 100, context: html, text, full: html, text
- src/hg/utils/verticalSplitSqlTable/verticalSplitSqlTable.c - lines changed 349, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/makefile - lines changed 26, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.as - lines changed 9, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/tests/expected/cvDb_abTarget.tab - lines changed 81, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.as - lines changed 17, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/tests/expected/cvDb_antibody.tab - lines changed 100, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/tests/expected/mergeErrs.txt - lines changed 29, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/tests/in/antibody.as - lines changed 20, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/tests/in/antibody.split - lines changed 7, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/tests/in/antibody.tab - lines changed 100, context: html, text, full: html, text
- src/utils/verticalSplitSqlTable/verticalSplitSqlTable.c - lines changed 349, context: html, text, full: html, text
- Addint verticalSplitSqlTable to makefile.
- A handy little text utility, sort of a text PCR.
- src/utils/textBetween/makefile - lines changed 18, context: html, text, full: html, text
- src/utils/textBetween/textBetween.c - lines changed 54, context: html, text, full: html, text
- Fixing up makefile after directory move.
- src/utils/verticalSplitSqlTable/makefile - lines changed 2, context: html, text, full: html, text
- Dealing with a name conflict I just introduced between lib and hg/lib.
- Dealing with a name conflict I just introduced between lib and hg/lib.
- Fixing usage message.
- src/utils/textBetween/textBetween.c - lines changed 1, context: html, text, full: html, text
- Clarifying usage message.
- src/utils/verticalSplitSqlTable/verticalSplitSqlTable.c - lines changed 2, context: html, text, full: html, text
- Another little text utility seems to work.
- src/utils/replaceTextBetween/makefile - lines changed 24, context: html, text, full: html, text
- src/utils/replaceTextBetween/replaceTextBetween.c - lines changed 76, context: html, text, full: html, text
- src/utils/replaceTextBetween/testExpected - lines changed 1, context: html, text, full: html, text
- src/utils/replaceTextBetween/testExpectedWithEnds - lines changed 1, context: html, text, full: html, text
- src/utils/replaceTextBetween/testInner - lines changed 1, context: html, text, full: html, text
- src/utils/replaceTextBetween/testOuter - lines changed 1, context: html, text, full: html, text
- Adding some scripting to post-process cv database tab and model files.
- src/hg/oneShot/testCvToSql/splitAntibody.ra - lines changed 7, context: html, text, full: html, text
- src/hg/oneShot/testCvToSql/splitAntibodyModel.py - lines changed 47, context: html, text, full: html, text
- src/hg/oneShot/testCvToSql/tryIt - lines changed 37, context: html, text, full: html, text
- Adding experiments with Django.
- python/users/kent/django/makefile - lines changed 2, context: html, text, full: html, text
- python/users/kent/django/mysite/__init__.py - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- python/users/kent/django/mysite/cvDb/__init__.py - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- python/users/kent/django/mysite/cvDb/admin.py - lines changed 42, context: html, text, full: html, text
- python/users/kent/django/mysite/cvDb/makefile - lines changed 2, context: html, text, full: html, text
- python/users/kent/django/mysite/cvDb/models.py - lines changed 757, context: html, text, full: html, text
- python/users/kent/django/mysite/cvDb/tests.py - lines changed 16, context: html, text, full: html, text
- python/users/kent/django/mysite/cvDb/urls.py - lines changed 13, context: html, text, full: html, text
- python/users/kent/django/mysite/cvDb/views.py - lines changed 1, context: html, text, full: html, text
- python/users/kent/django/mysite/jkSp/__init__.py - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- python/users/kent/django/mysite/jkSp/admin.py - lines changed 53, context: html, text, full: html, text
- python/users/kent/django/mysite/jkSp/models.py - lines changed 326, context: html, text, full: html, text
- python/users/kent/django/mysite/jkSp/tests.py - lines changed 16, context: html, text, full: html, text
- python/users/kent/django/mysite/jkSp/views.py - lines changed 1, context: html, text, full: html, text
- python/users/kent/django/mysite/makefile - lines changed 3, context: html, text, full: html, text
- python/users/kent/django/mysite/manage.py - lines changed 14, context: html, text, full: html, text
- python/users/kent/django/mysite/settings.py - lines changed 149, context: html, text, full: html, text
- python/users/kent/django/mysite/urls.py - lines changed 18, context: html, text, full: html, text
- python/users/kent/django/templates/404.html - lines changed 2, context: html, text, full: html, text
- python/users/kent/django/templates/admin/base_site.html - lines changed 10, context: html, text, full: html, text
- python/users/kent/django/templates/cvDb/index.html - lines changed 9, context: html, text, full: html, text
- python/users/kent/django/templates/polls/detail.html - lines changed 12, context: html, text, full: html, text
- python/users/kent/django/templates/polls/index.html - lines changed 9, context: html, text, full: html, text
- python/users/kent/django/templates/polls/results.html - lines changed 9, context: html, text, full: html, text
- Putting in docString style module comments as per style guide.
- python/users/kent/django/mysite/cvDb/README - lines changed 7, context: html, text, full: html, text
- python/users/kent/django/mysite/cvDb/admin.py - lines changed 8, context: html, text, full: html, text
- python/users/kent/django/mysite/cvDb/models.py - lines changed 2, context: html, text, full: html, text
- python/users/kent/django/mysite/cvDb/urls.py - lines changed 5, context: html, text, full: html, text
- python/users/kent/django/mysite/manage.py - lines changed 7, context: html, text, full: html, text
- python/users/kent/django/mysite/settings.py - lines changed 6, context: html, text, full: html, text
- python/users/kent/django/mysite/urls.py - lines changed 5, context: html, text, full: html, text
- A little README for the testCvToSql dir.
- src/hg/oneShot/testCvToSql/README - lines changed 2, context: html, text, full: html, text
- Adding a few more files will want to reuse come the true conversion.
- src/hg/oneShot/testCvToSql/splitAntibody.sql - lines changed 34, context: html, text, full: html, text
- src/hg/oneShot/testCvToSql/splitAntibodyModel.py - lines changed 31, context: html, text, full: html, text
- Some of this module to help turn encodeExp table into something in cvDb relational database is working.
- src/hg/oneShot/encodeExpToCvDb/doIt - lines changed 1, context: html, text, full: html, text
- src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c - lines changed 169, context: html, text, full: html, text
- src/hg/oneShot/encodeExpToCvDb/makefile - lines changed 18, context: html, text, full: html, text
- Changing class level comment to be in doc string format.
- src/hg/oneShot/testCvToSql/testCvToSql.c - lines changed 2, context: html, text, full: html, text
- Sort of a pain to get Django to generate this, so committing it.
- src/hg/oneShot/encodeExpToCvDb/exp.sql - lines changed 36, context: html, text, full: html, text
- Creating tab separated file and django model for an 'experiment' table based on hgFixed.encodeExps and hg19.metaDb
- src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c - lines changed 187, context: html, text, full: html, text
- Further work, mostly making it generate series table too.
- src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c - lines changed 93, context: html, text, full: html, text
- src/hg/oneShot/encodeExpToCvDb/series.sql - lines changed 8, context: html, text, full: html, text
- Adding results table.
- src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c - lines changed 110, context: html, text, full: html, text
- src/hg/oneShot/encodeExpToCvDb/results.sql - lines changed 13, context: html, text, full: html, text
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