File Changes for wong

v266_preview2 to v266_base (2012-04-17 to 2012-04-24) v266

• python/lib/ucscgenomics/mkChangeNotes.py
  • lines changed 2, context: html, text, full: html, text
    added a check to remove old revoked files from the old fileset
• src/hg/encode/qaAddTrackReferences/qaAddTrackReferences
  • lines changed 2, context: html, text, full: html, text
    correcting a formatting bug
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed3
  • lines changed 1, context: html, text, full: html, text
    removed zero length entries
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed4
  • lines changed 1, context: html, text, full: html, text
    removed zero length entries
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed5
  • lines changed 2, context: html, text, full: html, text
    removed offending line
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed6
  • lines changed 1, context: html, text, full: html, text
    removed zero length entries
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed7
  • lines changed 2, context: html, text, full: html, text
    removed zero length entries
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed8
  • lines changed 2, context: html, text, full: html, text
    removed zero length entries
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed9
  • lines changed 2, context: html, text, full: html, text
    removed zero length entries
• src/hg/encode/validateFiles/tests/goodMaleHg19.bedRrbs
  • lines changed 1, context: html, text, full: html, text
    removed offending line
  • lines changed 1, context: html, text, full: html, text
    removed zero length entries
• src/hg/encode/validateFiles/tests/goodMaleHg19.short.bedRrbs
  • lines changed 2000, context: html, text, full: html, text
    added in shortened version of bedRrbs test file
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    reversing a temporary tag chagne
  • lines changed 1, context: html, text, full: html, text
    changing insertLength to allow None as a field
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 53, context: html, text, full: html, text
    restored geo sample accessions from beta for ones that were missing
  • lines changed 5, context: html, text, full: html, text
    filled in missing labExpIds
  • lines changed 118, context: html, text, full: html, text
    changing ilNa to None
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 504, context: html, text, full: html, text
    added in new track's metadat
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 1173, context: html, text, full: html, text
    added in dcc accessions and expIdes
  • lines changed 19, context: html, text, full: html, text
    added in biorep for the tracks that were missing it and we were confident in the source
  • lines changed 4, context: html, text, full: html, text
    corrected a table error
  • lines changed 349, context: html, text, full: html, text
    added in md5sums
  • lines changed 139, context: html, text, full: html, text
    added in new generation 0 data for huvec and helaS3
  • lines changed 573, context: html, text, full: html, text
    moving platform to seqPlatform
  • lines changed 199, context: html, text, full: html, text
    removed old rep 162/3 stuff
  • lines changed 7, context: html, text, full: html, text
    adding in known expIds and accessions
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    movign release2.ra to release3.ra
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.html
  • lines changed 1, context: html, text, full: html, text
    Qa fixes
  • lines changed 2, context: html, text, full: html, text
    corrected sentence
  • lines changed 1, context: html, text, full: html, text
    corrected spelling error
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.ra
  • lines changed 103, context: html, text, full: html, text
    Qa fixes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra
  • lines changed 1, context: html, text, full: html, text
    removed extraFields from haib genotype old trackDb.ra
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra
  • lines changed 9424, context: html, text, full: html, text
    movign release2.ra to release3.ra
  • lines changed 163, context: html, text, full: html, text
    adding in tracks i forogt to add
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra
  • lines changed 12, context: html, text, full: html, text
    removed extra fields from old synth trackDb.ra
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra
  • lines changed 30, context: html, text, full: html, text
    fixed defaults
  • lines changed 264, context: html, text, full: html, text
    fixed a lot of trackDb problems
  • lines changed 1, context: html, text, full: html, text
    corrected a table error
  • lines changed 54, context: html, text, full: html, text
    added in new generation 0 data for huvec and helaS3