Commits for wong

v266_preview2 to v266_base (2012-04-17 to 2012-04-24) v266

• movign release2.ra to release3.ra
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra - lines changed 9424, context: html, text, full: html, text
• adding in tracks i forogt to add
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra - lines changed 163, context: html, text, full: html, text
• added in new track's metadat
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 504, context: html, text, full: html, text
• Qa fixes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.ra - lines changed 103, context: html, text, full: html, text
• corrected sentence
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.html - lines changed 2, context: html, text, full: html, text
• fixed defaults
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra - lines changed 30, context: html, text, full: html, text
• removed extra fields from old synth trackDb.ra
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra - lines changed 12, context: html, text, full: html, text
• removed extraFields from haib genotype old trackDb.ra
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra - lines changed 1, context: html, text, full: html, text
• added in dcc accessions and expIdes
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 1173, context: html, text, full: html, text
• added in biorep for the tracks that were missing it and we were confident in the source
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 19, context: html, text, full: html, text
• fixed a lot of trackDb problems
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra - lines changed 264, context: html, text, full: html, text
• corrected a table error
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra - lines changed 1, context: html, text, full: html, text
• added in md5sums
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 349, context: html, text, full: html, text
• reversing a temporary tag chagne
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• restored geo sample accessions from beta for ones that were missing
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 53, context: html, text, full: html, text
• correcting a formatting bug
  • src/hg/encode/qaAddTrackReferences/qaAddTrackReferences - lines changed 2, context: html, text, full: html, text
• filled in missing labExpIds
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 5, context: html, text, full: html, text
• corrected spelling error
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.html - lines changed 1, context: html, text, full: html, text
• changing insertLength to allow None as a field
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• changing ilNa to None
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 118, context: html, text, full: html, text
• removed offending line
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bedRrbs - lines changed 1, context: html, text, full: html, text
• added in shortened version of bedRrbs test file
  • src/hg/encode/validateFiles/tests/goodMaleHg19.short.bedRrbs - lines changed 2000, context: html, text, full: html, text
• added a check to remove old revoked files from the old fileset
  • python/lib/ucscgenomics/mkChangeNotes.py - lines changed 2, context: html, text, full: html, text
• removed offending line
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bed5 - lines changed 2, context: html, text, full: html, text
• removed zero length entries
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bed3 - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bed4 - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bed6 - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bed7 - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bed8 - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bed9 - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/validateFiles/tests/goodMaleHg19.bedRrbs - lines changed 1, context: html, text, full: html, text
• added in new generation 0 data for huvec and helaS3
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 139, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra - lines changed 54, context: html, text, full: html, text
• moving platform to seqPlatform
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 573, context: html, text, full: html, text
• removed old rep 162/3 stuff
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 199, context: html, text, full: html, text
• adding in known expIds and accessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 7, context: html, text, full: html, text