Commits for braney

v265_base to v266_preview (2012-03-27 to 2012-04-10) v266

• checking Mark's changes back in. #1201
  • src/lib/pipeline.c - lines changed 227, context: html, text, full: html, text
  • src/lib/tests/expected/pipelineExecError.err - lines changed 2, context: html, text, full: html, text
  • src/lib/tests/expected/pipelineExecError.parent.err - lines changed 2, context: html, text, full: html, text
  • src/lib/tests/makefile - lines changed 9, context: html, text, full: html, text
• build new uniProt database (#7045)
  • src/hg/makeDb/doc/uniProt/sp120323.txt - lines changed 54, context: html, text, full: html, text
• don't check "numbering" field in omimGeneMap because it changes arbitrarily #6943
  • src/hg/utils/omim/validateOmim.sh - lines changed 8, context: html, text, full: html, text
• start on genepred / variant annoGrator. #6152
  • src/hg/inc/annoGratorGpVar.h - lines changed 23, context: html, text, full: html, text
  • src/hg/lib/annoGratorGpVar.c - lines changed 133, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/tests/annoGratorTester.c - lines changed 18, context: html, text, full: html, text
  • src/hg/lib/tests/annoGratorTests.mk - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/tests/expected/annoGrator/pgSnpKgDbToGpFx.txt - lines changed 4, context: html, text, full: html, text
  • src/lib/annoGrator.c - lines changed 2, context: html, text, full: html, text
• fix bug in annoGratorClose
  • src/lib/annoGrator.c - lines changed 2, context: html, text, full: html, text
• fix #7505 by adding a track handler for the pesky broken track
  • src/hg/hgTracks/bedTrack.c - lines changed 7, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
• more work on annoGratorGpVar and gpFx libraries.
  • src/TAGS - lines changed 18929, context: html, text, full: html, text
  • src/hg/inc/annoGratorGpVar.h - lines changed 12, context: html, text, full: html, text
  • src/hg/inc/gpFx.h - lines changed 28, context: html, text, full: html, text
  • src/hg/lib/annoGratorGpVar.c - lines changed 54, context: html, text, full: html, text
  • src/hg/lib/gpFx.c - lines changed 96, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/tests/annoGratorTester.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/tests/expected/annoGrator/pgSnpKgDbToGpFx.txt - lines changed 5, context: html, text, full: html, text
• add strPur4 for Kord.
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 16, context: html, text, full: html, text