File Changes for cricket

v265_base to v266_preview (2012-03-27 to 2012-04-10) v266

• src/hg/encode/DAFs/3.0/hg19/wgEncodeCaltechRnaSeq.daf
  • lines changed 6, context: html, text, full: html, text
    Improving dafs
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf
  • lines changed 5, context: html, text, full: html, text
    Improving dafs
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlShortRnaSeq.daf
  • lines changed 2, context: html, text, full: html, text
    Improving dafs
• src/hg/encode/DAFs/3.0/hg19/wgEncodeGisRnaPet.daf
  • lines changed 16, context: html, text, full: html, text
    Improving dafs
• src/hg/encode/DAFs/3.0/hg19/wgEncodeRikenCage.daf
  • lines changed 6, context: html, text, full: html, text
    Improving dafs
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 17, context: html, text, full: html, text
    Removed the validateSAM since there never has been a validateFiles option for SAM. If this funtion were ever called, it would fail, and it is never alled anyehrew in the code
  • lines changed 31, context: html, text, full: html, text
    Removing validateBowtie. This is code to validate a format that the coder defined as unknown. We are not getting data of this form nor can I find evidence that we have any
  • lines changed 15, context: html, text, full: html, text
    Cleaning up the dispatch table
• src/hg/encode/validateFiles/validateFilesUsage
  • lines changed 73, context: html, text, full: html, text
    Incorporating Galt's Changes and suggestion a better format
• src/hg/makeDb/hgLoadBed/hgLoadBed.c
  • lines changed 4, context: html, text, full: html, text
    Changing the dotIsNull to load -1
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 2, context: html, text, full: html, text
    adding the monocytes parent back in
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 4589, context: html, text, full: html, text
    Added lots of new data
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Removing CSHL Long so that we do not upset the build. CSHL long suffered a terrible merge conflict that I do not have time to recover fully from until after CGI release and so I do not want to have this track mucking up the works.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra
  • lines changed 318, context: html, text, full: html, text
    Trying to resolve the merge conflict between Matt and I adding data. I think I have lost Matts changes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html
  • lines changed 2, context: html, text, full: html, text
    Removing nofollow
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
  • lines changed 6, context: html, text, full: html, text
    Removing nofollow