Commits for cricket

v265_base to v266_preview (2012-03-27 to 2012-04-10) v266

• adding the monocytes parent back in
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Improving dafs
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeCaltechRnaSeq.daf - lines changed 6, context: html, text, full: html, text
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf - lines changed 5, context: html, text, full: html, text
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlShortRnaSeq.daf - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeGisRnaPet.daf - lines changed 16, context: html, text, full: html, text
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeRikenCage.daf - lines changed 6, context: html, text, full: html, text
• Removed the validateSAM since there never has been a validateFiles option for SAM. If this funtion were ever called, it would fail, and it is never alled anyehrew in the code
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 17, context: html, text, full: html, text
• Removing validateBowtie. This is code to validate a format that the coder defined as unknown. We are not getting data of this form nor can I find evidence that we have any
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 31, context: html, text, full: html, text
• Cleaning up the dispatch table
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 15, context: html, text, full: html, text
• Changing the dotIsNull to load -1
  • src/hg/makeDb/hgLoadBed/hgLoadBed.c - lines changed 4, context: html, text, full: html, text
• Incorporating Galt's Changes and suggestion a better format
  • src/hg/encode/validateFiles/validateFilesUsage - lines changed 73, context: html, text, full: html, text
• Removing nofollow
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html - lines changed 6, context: html, text, full: html, text
• Added lots of new data
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 4589, context: html, text, full: html, text
• Trying to fix merge in CSHL Long metadata. I think I lost Matts changes.
• Trying to resolve the merge conflict between Matt and I adding data. I think I have lost Matts changes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra - lines changed 318, context: html, text, full: html, text
• Removing CSHL Long so that we do not upset the build. CSHL long suffered a terrible merge conflict that I do not have time to recover fully from until after CGI release and so I do not want to have this track mucking up the works.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text