File Changes for braney

v266_preview to v266_preview2 (2012-04-10 to 2012-04-17) v266

• src/hg/inc/gpFx.h
  • lines changed 10, context: html, text, full: html, text
    interim check-in for #6152. Adding variant structure and setup that allows maintaing multiple variants in one gp.
  • lines changed 19, context: html, text, full: html, text
    on-going work on annoGrator (#6152). Started using Sequence Ontology numbers from EBI, and added a generic variant structure as input to gpFx library
• src/hg/inc/soterm.h
  • lines changed 62, context: html, text, full: html, text
    on-going work on annoGrator (#6152). Started using Sequence Ontology numbers from EBI, and added a generic variant structure as input to gpFx library
• src/hg/inc/variant.h
  • lines changed 26, context: html, text, full: html, text
    interim check-in for #6152. Adding variant structure and setup that allows maintaing multiple variants in one gp.
  • lines changed 5, context: html, text, full: html, text
    on-going work on annoGrator (#6152). Started using Sequence Ontology numbers from EBI, and added a generic variant structure as input to gpFx library
• src/hg/lib/annoGratorGpVar.c
  • lines changed 6, context: html, text, full: html, text
    interim check-in for #6152. Adding variant structure and setup that allows maintaing multiple variants in one gp.
  • lines changed 1, context: html, text, full: html, text
    oops... add parameters to gpFx routine
  • lines changed 58, context: html, text, full: html, text
    on-going work on annoGrator (#6152). Started using Sequence Ontology numbers from EBI, and added a generic variant structure as input to gpFx library
• src/hg/lib/gpFx.c
  • lines changed 104, context: html, text, full: html, text
    interim check-in for #6152. Adding variant structure and setup that allows maintaing multiple variants in one gp.
  • lines changed 24, context: html, text, full: html, text
    on-going work on annoGrator (#6152). Started using Sequence Ontology numbers from EBI, and added a generic variant structure as input to gpFx library
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    interim check-in for #6152. Adding variant structure and setup that allows maintaing multiple variants in one gp.
• src/hg/lib/tests/annoGratorTester.c
  • lines changed 1, context: html, text, full: html, text
    on-going work on annoGrator (#6152). Started using Sequence Ontology numbers from EBI, and added a generic variant structure as input to gpFx library
• src/hg/lib/tests/expected/annoGrator/pgSnpKgDbToGpFx.txt
  • lines changed 9, context: html, text, full: html, text
    on-going work on annoGrator (#6152). Started using Sequence Ontology numbers from EBI, and added a generic variant structure as input to gpFx library
• src/hg/lib/variant.c
  • lines changed 56, context: html, text, full: html, text
    interim check-in for #6152. Adding variant structure and setup that allows maintaing multiple variants in one gp.
  • lines changed 4, context: html, text, full: html, text
    on-going work on annoGrator (#6152). Started using Sequence Ontology numbers from EBI, and added a generic variant structure as input to gpFx library
• src/hg/makeDb/doc/strPur4.txt
  • lines changed 627, context: html, text, full: html, text
    add strPur4 for Kord
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    add strPur4 for Kord.
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 1, context: html, text, full: html, text
    oops... had the wrong name for strPur4's 11.ooc
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    add strPur4 for Kord
• src/hg/makeDb/trackDb/urchin/strPur4/description.html
  • lines changed 129, context: html, text, full: html, text
    add strPur4 for Kord
• src/hg/makeDb/trackDb/urchin/strPur4/gap.html
  • lines changed 64, context: html, text, full: html, text
    add strPur4 for Kord
• src/hg/makeDb/trackDb/urchin/strPur4/gold.html
  • lines changed 23, context: html, text, full: html, text
    add strPur4 for Kord
• src/hg/makeDb/trackDb/urchin/strPur4/trackDb.ra
  • lines changed 68, context: html, text, full: html, text
    add strPur4 for Kord