Commits for fang

v266_preview to v266_preview2 (2012-04-10 to 2012-04-17) v266

• for the new track for new datasets with hg19/gencode search and both unmodified and modified peptide mapping, this sharet the same supertrack with the old release
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeUncBsuProtGenc.daf - lines changed 68, context: html, text, full: html, text
• remove this file, it is replaced by xxxProt2.daf at the lab's request
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeUncBsuProtGenc.daf - lines changed 68, context: html, text, full: html, text
• new daf file with new compositePrefix
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeUncBsuProt2.daf - lines changed 68, context: html, text, full: html, text
• changed the name back as C & V are concerned that 2 in xxxProt2 may confuse people
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeUncBsuProtGenc.daf - lines changed 68, context: html, text, full: html, text
• this is replaced back by xxxProtGenc.daf as C & V are concerned that 2 may confuse people
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeUncBsuProt2.daf - lines changed 68, context: html, text, full: html, text
• creating basic trackDb and metaDb for xxxUncBsuProtGenc tracks
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProtGenc.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.release1.ra - lines changed 57, context: html, text, full: html, text
• add xxxUncBsuProtGenc track
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
• fix typos in view name, remove view for hg19 search only results
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.release1.ra - lines changed 13, context: html, text, full: html, text
• fix typo
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.release1.ra - lines changed 1, context: html, text, full: html, text
• update with new submissions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProtGenc.ra - lines changed 297, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.release1.ra - lines changed 54, context: html, text, full: html, text
• include xxxSydhHist.release2.ra
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
• add beta,product to the previous release
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
• clean up indent
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHist.release2.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• clean up short labels
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHist.release2.ra - lines changed 27, context: html, text, full: html, text
• remove .html from the html file in the top stanza
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.ra - lines changed 1, context: html, text, full: html, text
• modified release note
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.html - lines changed 1, context: html, text, full: html, text
• reformat references
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.html - lines changed 28, context: html, text, full: html, text
• add Signal view for unique reads only bigwig file, named as xxx.unique.bigwig and use RawSignal view for the regular bigwig file containing both multi- and uniq-reads
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeCaltechRnaSeq.daf - lines changed 6, context: html, text, full: html, text
• fix the html p tag
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.html - lines changed 2, context: html, text, full: html, text
• remove merge conflict line
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 3, context: html, text, full: html, text