File Changes for tdreszer

v266_preview to v266_preview2 (2012-04-10 to 2012-04-17) v266

• src/cdnaAli/ali2alx/makefile
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    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/cdnaAli/binGood/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/cdnaAli/cdnaOff/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/cdnaAli/cluster/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/cdnaAli/findCdna/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/cdnaAli/g2cCheck/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/cdnaAli/introns/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/cdnaAli/sortFilt/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/cdnaAli/stitchea/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/getgene/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/hg/autoXml/makefile
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    Another batch of makefile changes to add -lm
• src/hg/ctgToChromFa/makefile
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    Another batch of makefile changes to add -lm
• src/hg/fakeOut/makefile
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    Another batch of makefile changes to add -lm
• src/hg/gbGetEntries/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/hg/gbOneAcc/makefile
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    Another batch of makefile changes to add -lm
• src/hg/geneBounds/orf/orf.c
  • lines changed 16, context: html, text, full: html, text
    Changed name of function to avoid conflicting with lib function
• src/hg/mouseStuff/netStats/netStats.c
  • lines changed 4, context: html, text, full: html, text
    Changed name of local function to not conflict with global function. These cases were fallout from Galt's check-in, I believe. I am fixing these as per my duties as buildMeister
• src/hg/patCount/makefile
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    Another batch of makefile changes to add -lm
• src/hg/scanRa/makefile
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    Another batch of makefile changes to add -lm
• src/hg/splitFa/makefile
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    Another batch of makefile changes to add -lm
• src/index/indexfa/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/index/indexgl/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/index/ixali/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/index/ixword1/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/index/ixword3/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/index/makepgo/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/index/stToXao/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/lib/tests/makefile
  • lines changed 15, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/primeMate/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/protDust/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/reformat/fatont4/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/reformat/gb2cdi/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/reformat/gbtofa/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/reformat/geniegff/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/reformat/gffgenes/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/reformat/moresyn/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/scanIntrons/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/tracks/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/addCols/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/aveCols/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/catUncomment/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/ccCp/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/chopFaLines/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/countChars/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/faNoise/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/faOneRecord/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/faSplit/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/utils/findMotif/findMotif.c
  • lines changed 4, context: html, text, full: html, text
    Changed name of global var to avoid conflict with Galt's lib changes.
• src/utils/fixCr/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/htmlPics/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/jkUniq/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/newProg/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/nibFrag/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/nibSize/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/qa/weeklybld/buildEnv.csh
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    v266 preview2
• src/utils/qa/weeklybld/doNewBranch.csh
  • lines changed 2, context: html, text, full: html, text
    Galt pointed out a better way of bracketing the git command used to determine the cycle's check-ins.
• src/utils/qa/weeklybld/summaryEmail.sh
  • lines changed 2, context: html, text, full: html, text
    Galt pointed out a better way of bracketing the git command used to determine the cycle's check-ins.
• src/utils/rmFaDups/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/scaffoldFaToAgp/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/scrambleFa/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/subChar/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/toLower/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/toUpper/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/undupFa/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/upper/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/utils/wordLine/makefile
  • lines changed 1, context: html, text, full: html, text
    Another batch of makefile changes to add -lm
• src/weblet/counter/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/weblet/hitreport/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.
• src/xenoAli/bwana/makefile
  • lines changed 1, context: html, text, full: html, text
    Added -lm to a bunch of makefiles since Galt's recent change (I think) calls math routines in lib code.