File Changes for hiram

v268_preview2 to v268_base (2012-05-29 to 2012-06-05) v268

• src/hg/lib/ncbiIncidentDb.as
  • lines changed 9, context: html, text, full: html, text
    replaced by grcIncidentDb.as
• src/hg/makeDb/doc/chrPic1.txt
  • lines changed 27, context: html, text, full: html, text
    joinerCheck clean and in the pushQ
• src/hg/makeDb/doc/echTel1.txt
  • lines changed 12, context: html, text, full: html, text
    add quality table creation procedure
  • lines changed 33, context: html, text, full: html, text
    adding search rules for assembly and Ensembl Gene Scaffold tracks
• src/hg/makeDb/doc/galGal4.txt
  • lines changed 28, context: html, text, full: html, text
    joinerCheck clean and in the pushQ
• src/hg/makeDb/doc/mm10.txt
  • lines changed 243, context: html, text, full: html, text
    load of maf frames data for 60-way alignment
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 27, context: html, text, full: html, text
    genbank.mrna.xeno.load is way too much for obscure assemblies, especially scaffold assemblies
  • lines changed 1, context: html, text, full: html, text
    and need to explicitly turn off genbank.mrna.xeno.load when not wanted
• src/hg/makeDb/trackDb/chicken/galGal4/gap.html
  • lines changed 59, context: html, text, full: html, text
    correct contents to match reality
• src/hg/makeDb/trackDb/chicken/galGal4/gold.html
  • lines changed 9, context: html, text, full: html, text
    correct contents to match reality
• src/hg/makeDb/trackDb/ncbiIncidentDb.html
  • lines changed 26, context: html, text, full: html, text
    replaced by grcIncidentDb.html redmine 7978
• src/hg/makeDb/trackDb/rat/rn5/gap.html
  • lines changed 54, context: html, text, full: html, text
    correct contents to better match reality
• src/hg/makeDb/trackDb/rat/rn5/gold.html
  • lines changed 5, context: html, text, full: html, text
    correct contents to better match reality
• src/hg/makeDb/trackDb/tenrec/echTel1/gap.html
  • lines changed 16, context: html, text, full: html, text
    override global gap.html
• src/hg/makeDb/trackDb/tenrec/echTel1/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    override global gap.html
• src/hg/makeDb/trackDb/tenrec/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    add search rule for gold table and therefore assembly track
  • lines changed 6, context: html, text, full: html, text
    search rule for ensemblGeneScaffold almost works
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 22, context: html, text, full: html, text
    removing ncbiIncidentDb track definition, replaced by grcIncidentDb redmine 7978
• src/hg/makeDb/trackDb/turtle/chrPic1/gap.html
  • lines changed 59, context: html, text, full: html, text
    corrected contents to match reality
• src/hg/makeDb/trackDb/turtle/chrPic1/gold.html
  • lines changed 4, context: html, text, full: html, text
    corrected contents to match reality