Commits for hiram

v268_preview2 to v268_base (2012-05-29 to 2012-06-05) v268

• joinerCheck clean and in the pushQ
  • src/hg/makeDb/doc/chrPic1.txt - lines changed 27, context: html, text, full: html, text
• joinerCheck clean and in the pushQ
  • src/hg/makeDb/doc/galGal4.txt - lines changed 28, context: html, text, full: html, text
• load of maf frames data for 60-way alignment
  • src/hg/makeDb/doc/mm10.txt - lines changed 243, context: html, text, full: html, text
• override global gap.html
  • src/hg/makeDb/trackDb/tenrec/echTel1/gap.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tenrec/echTel1/trackDb.ra - lines changed 3, context: html, text, full: html, text
• genbank.mrna.xeno.load is way too much for obscure assemblies, especially scaffold assemblies
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 27, context: html, text, full: html, text
• and need to explicitly turn off genbank.mrna.xeno.load when not wanted
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• add quality table creation procedure
  • src/hg/makeDb/doc/echTel1.txt - lines changed 12, context: html, text, full: html, text
• corrected contents to match reality
  • src/hg/makeDb/trackDb/turtle/chrPic1/gap.html - lines changed 59, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turtle/chrPic1/gold.html - lines changed 4, context: html, text, full: html, text
• correct contents to match reality
  • src/hg/makeDb/trackDb/chicken/galGal4/gap.html - lines changed 59, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal4/gold.html - lines changed 9, context: html, text, full: html, text
• correct contents to better match reality
  • src/hg/makeDb/trackDb/rat/rn5/gap.html - lines changed 54, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/gold.html - lines changed 5, context: html, text, full: html, text
• removing ncbiIncidentDb track definition, replaced by grcIncidentDb redmine 7978
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 22, context: html, text, full: html, text
• replaced by grcIncidentDb.as
  • src/hg/lib/ncbiIncidentDb.as - lines changed 9, context: html, text, full: html, text
• replaced by grcIncidentDb.html redmine 7978
  • src/hg/makeDb/trackDb/ncbiIncidentDb.html - lines changed 26, context: html, text, full: html, text
• add search rule for gold table and therefore assembly track
  • src/hg/makeDb/trackDb/tenrec/trackDb.ra - lines changed 8, context: html, text, full: html, text
• search rule for ensemblGeneScaffold almost works
  • src/hg/makeDb/trackDb/tenrec/trackDb.ra - lines changed 6, context: html, text, full: html, text
• adding search rules for assembly and Ensembl Gene Scaffold tracks
  • src/hg/makeDb/doc/echTel1.txt - lines changed 33, context: html, text, full: html, text